World's Best Scientists 2026 revealed!

D-Index & Metrics

Molecular Biology

D-Index
54
Citations
8942
World Ranking
2337
National Ranking
1156

Overview

Simone Sidoli is affiliated with the Albert Einstein College of Medicine in the United States. Their research primarily spans the fields of Biochemistry, Genetics, and Molecular Biology, with a significant focus on Medicine. Within these broad areas, their subfields of study include Molecular Biology, Epidemiology, Physiology, Immunology, and Genetics.

Their main research topics cover a range of intricate biological processes and molecular mechanisms. These include:

  • Epigenetics and DNA Methylation
  • Genomics and Chromatin Dynamics
  • RNA modifications and cancer
  • Cancer-related gene regulation
  • Protein Degradation and Inhibitors
  • Histone Deacetylase Inhibitors Research
  • CRISPR and Genetic Engineering

Simone Sidoli's recent publications illustrate the breadth of their work across molecular biology and epigenetics. Selected papers include:

  • An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease, 2020, published in Nature Genetics
  • Guide for protein fold change and p-value calculation for non-experts in proteomics, 2020, published in Molecular Omics
  • H1 histones control the epigenetic landscape by local chromatin compaction, 2020, published in Nature
  • Macrophages use apoptotic cell-derived methionine and DNMT3A during efferocytosis to promote tissue resolution, 2022, published in Nature Metabolism
  • Long-term behavioral and cell-type-specific molecular effects of early life stress are mediated by H3K79me2 dynamics in medium spiny neurons, 2021, published in Nature Neuroscience

Their frequent collaborators include several researchers with whom they have co-authored multiple publications. Key collaborators are:

  • Stephanie Stransky (55 collaborations)
  • Jennifer T. Aguilan (42 collaborations)
  • Benjamin A. García (22 collaborations)
  • Ronald Cutler (16 collaborations)
  • Sarah Graff (15 collaborations)

Simone Sidoli has published extensively in various scientific venues. The most frequent publication venues are:

  • bioRxiv (Cold Spring Harbor Laboratory), 66 publications
  • Cancer Research, 7 publications
  • Blood, 7 publications
  • Molecular Cell, 6 publications
  • Circulation Research, 6 publications

Best Publications

  • Two distinct modes for propagation of histone PTMs across the cell cycle

    Constance Alabert;Teresa K. Barth;Nazaret Reverón-Gómez;Simone Sidoli

  • High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells.

    Chongsheng He;Simone Sidoli;Robert Warneford-Thomson;Deirdre C. Tatomer

  • Transcription Factor Cooperativity in Early Adipogenic Hotspots and Super-Enhancers

    Rasmus Siersbæk;Atefeh Rabiee;Ronni Nielsen;Simone Sidoli

  • An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease.

    Raffaella Nativio;Yemin Lan;Greg Donahue;Simone Sidoli;Simone Sidoli

  • Acetyl-CoA Metabolism Supports Multistep Pancreatic Tumorigenesis

    Alessandro Carrer;Sophie Trefely;Sophie Trefely;Steven Zhao;Sydney L. Campbell

  • H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification

    Dario Nicetto;Greg Donahue;Tanya Jain;Tao Peng

  • Alcohol metabolism contributes to brain histone acetylation

    P. Mews;P. Mews;G. Egervari;R. Nativio;S. Sidoli;S. Sidoli

  • Genomic and Proteomic Resolution of Heterochromatin and Its Restriction of Alternate Fate Genes.

    Justin S. Becker;Ryan L. McCarthy;Simone Sidoli;Greg Donahue

  • Complete Workflow for Analysis of Histone Post-translational Modifications Using Bottom-up Mass Spectrometry: From Histone Extraction to Data Analysis.

    Simone Sidoli;Natarajan V. Bhanu;Kelly R. Karch;Xiaoshi Wang

  • Characterization of histone acylations links chromatin modifications with metabolism.

    Johayra Simithy;Simone Sidoli;Zuo Fei Yuan;Mariel Coradin

  • EpiProfile 2.0: A Computational Platform for Processing Epi-Proteomics Mass Spectrometry Data.

    Zuo Fei Yuan;Simone Sidoli;Dylan M. Marchione;Johayra Simithy

  • Proteomics in chromatin biology and epigenetics: Elucidation of post-translational modifications of histone proteins by mass spectrometry.

    Simone Sidoli;Lei Cheng;Ole Nørregaard Jensen

  • H1 histones control the epigenetic landscape by local chromatin compaction

    Michael A. Willcockson;Sean E. Healton;Cary N. Weiss;Boris A. Bartholdy

  • Domain-focused CRISPR screen identifies HRI as a fetal hemoglobin regulator in human erythroid cells.

    Jeremy D. Grevet;Jeremy D. Grevet;Xianjiang Lan;Nicole Hamagami;Christopher R. Edwards

  • Guide for protein fold change and p-value calculation for non-experts in proteomics

    Jennifer T. Aguilan;Katarzyna Kulej;Simone Sidoli

  • Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin

    Kirsty Jamieson;Elizabeth T. Wiles;Kevin J. McNaught;Simone Sidoli

  • Histone Acetyltransferase p300 Induces De Novo Super-Enhancers to Drive Cellular Senescence

    Payel Sen;Yemin Lan;Catherine Y. Li;Simone Sidoli

  • EpiProfile Quantifies Histone Peptides With Modifications by Extracting Retention Time and Intensity in High-resolution Mass Spectra

    Zuo Fei Yuan;Shu Lin;Rosalynn C. Molden;Xing Jun Cao

  • Quantitative proteomics analysis of platelet-derived microparticles reveals distinct protein signatures when stimulated by different physiological agonists.

    Marco Milioli;Maria Ibáñez-Vea;Simone Sidoli;Giuseppe Palmisano

  • Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones.

    Simone Sidoli;Veit Schwämmle;Chrystian Ruminowicz;Thomas A. Hansen

Frequent Co-Authors

Benjamin A. Garcia
Benjamin A. Garcia Washington University in St. Louis
Ole Nørregaard Jensen
Ole Nørregaard Jensen University of Southern Denmark
Kristian Helin
Kristian Helin Institute of Cancer Research
Susanne Mandrup
Susanne Mandrup University of Southern Denmark
Shelley L. Berger
Shelley L. Berger University of Pennsylvania
Eric J. Nestler
Eric J. Nestler Icahn School of Medicine at Mount Sinai
Roberto Bonasio
Roberto Bonasio University of Pennsylvania
Chuan He
Chuan He University of Chicago
Gerd A. Blobel
Gerd A. Blobel Children's Hospital of Philadelphia
Ross C. Hardison
Ross C. Hardison Pennsylvania State University

If you think any of the details on this page are incorrect, let us know.

Report an issue

We appreciate your kind effort to assist us to improve this page, it would be helpful providing us with as much detail as possible in the text box below:

Related Online Degrees & Career Pathways

If you’re interested in Molecular Biology, you may also want to explore other fields that combine life sciences with supporting human health, society, and justice. Many universities in the USA now offer programs like social work masters programs online, which can prepare you for vital roles in community and healthcare organizations.

For those wanting to deepen their understanding of human behavior, investigating a master psychologie à distance offers flexible learning options. If your interests align with mental health, consider a fast track mental health counseling program, which can help you quickly enter a rewarding and growing field.

Graduates with strong scientific backgrounds may also pursue specialized roles in forensic science. A degree in this area, such as those focusing on highest paying forensic psychology jobs, offers an exciting intersection between biology, psychology, and legal studies. These related pathways provide a diverse range of opportunities for those passionate about science and its real-world impact.

Best Scientists Citing Simone Sidoli

Trending Scientists