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Molecular Biology
USA
2026

D-Index & Metrics

Molecular Biology

D-Index
141
Citations
120265
World Ranking
115
National Ranking
76

Research.com Recognitions

  • 2026 - Research.com Molecular Biology in United States Leader Award
  • 2025 - Research.com Molecular Biology in United States Leader Award
  • 2023 - Research.com Molecular Biology in United States Leader Award
  • 2018 - Member of the National Academy of Sciences
  • 1998 - Fellow of Alfred P. Sloan Foundation

Overview

Andrej Sali is affiliated with the University of California, San Francisco in the United States. Their research primarily focuses on the field of Biochemistry, Genetics and Molecular Biology, with a strong emphasis on Molecular Biology as a subfield. Other notable subfields of study include Materials Chemistry, Infectious Diseases, Cell Biology, and Radiology, Nuclear Medicine and Imaging.

The scientist's work covers several key topics including:

  • Protein Structure and Dynamics
  • Enzyme Structure and Function
  • RNA Research and Splicing
  • Nuclear Structure and Function
  • Monoclonal and Polyclonal Antibodies Research
  • RNA and protein synthesis mechanisms
  • Microbial Metabolic Engineering and Bioproduction

Andrej Sali has co-authored extensively with researchers such as Ignacia Echeverria, Michael P. Rout, Brian T. Chait, Benjamin Webb, and Brinda Vallat. These collaborations reflect sustained research partnerships with key figures in related scientific domains.

Frequent publication venues for their work include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Biophysical Journal
  • Zenodo (CERN European Organization for Nuclear Research)
  • Proceedings of the National Academy of Sciences
  • Protein Science

Their recent significant publications include:

  • RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences (2020, Nucleic Acids Research)
  • RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning (2022, Nucleic Acids Research)
  • A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing (2020, bioRxiv (Cold Spring Harbor Laboratory))
  • Protein Structure Modeling with MODELLER (2020, Methods in molecular biology)
  • Comprehensive structure and functional adaptations of the yeast nuclear pore complex (2022, Cell)

The scientist has been recognized with memberships and fellowships, including being named a Member of the National Academy of Sciences in 2018 and a Fellow of the Alfred P. Sloan Foundation in 1998.

Best Publications

  • Comparative Protein Modelling by Satisfaction of Spatial Restraints

    Andrej Šali;Tom L. Blundell

  • Comparative Protein Structure Modeling Using MODELLER

    Narayanan Eswar;Ben Webb;Marc A. Marti‐Renom;M.S. Madhusudhan

  • A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.

    David E. Gordon;Gwendolyn M. Jang;Mehdi Bouhaddou;Jiewei Xu

  • Comparative protein structure modeling of genes and genomes

    Marc A. Martí-Renom;Ashley C. Stuart;András Fiser;Roberto Sánchez

  • Protein structure modeling with MODELLER.

    Benjamin Webb;Benjamin Webb;Andrej Sali;Andrej Sali

  • Modeling of loops in protein structures.

    András Fiser;Richard Kinh Gian Do;Andrej Šali

  • Statistical potential for assessment and prediction of protein structures

    Min-yi Shen;Andrej Sali

  • Protein Structure Prediction and Structural Genomics

    David Baker;Andrej Sali

  • Modeller: generation and refinement of homology-based protein structure models.

    András Fiser;Andrej Šali

  • RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.

    Stephen K. Burley;Charmi Bhikadiya;Chunxiao Bi;Sebastian Bittrich

  • Evaluation of comparative protein modeling by MODELLER.

    A. Sali;L. Potterton;Feng Yuan;H. Van Vlijmen

  • How does a protein fold

    Andrej Šali;Eugene Shakhnovich;Martin Karplus

  • The molecular architecture of the nuclear pore complex

    Frank Alber;Svetlana Dokudovskaya;Liesbeth M. Veenhoff;Wenzhu Zhang

  • Protein Folding: A Perspective from Theory and Experiment.

    Christopher M. Dobson;Andrej Šali;Martin Karplus

  • Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.

    Peter Cimermancic;Marnix H. Medema;Jan Claesen;Kenji Kurita

  • MODBASE, a database of annotated comparative protein structure models, and associated resources

    Ursula Pieper;Narayanan Eswar;Ben M. Webb;David Eramian;David Eramian

  • Protein production and purification.

    S Gräslund

  • ModLoop: automated modeling of loops in protein structures

    András Fiser;Andrej Sali

  • Global landscape of HIV-human protein complexes

    Stefanie Jäger;Peter Cimermancic;Peter Cimermancic;Natali Gulbahce;Natali Gulbahce;Jeffrey R. Johnson;Jeffrey R. Johnson;Jeffrey R. Johnson

  • Comparative protein modeling by satisfaction of spatial restraints

    A. Sali

Frequent Co-Authors

Michael P. Rout
Michael P. Rout Rockefeller University
Marc A. Marti-Renom
Marc A. Marti-Renom Pompeu Fabra University
Stephen K. Burley
Stephen K. Burley Rutgers, The State University of New Jersey
Brian T. Chait
Brian T. Chait Rockefeller University
Tom L. Blundell
Tom L. Blundell University of Cambridge
Nevan J. Krogan
Nevan J. Krogan University of California, San Francisco
Kathleen M. Giacomini
Kathleen M. Giacomini University of California, San Francisco
Helen M. Berman
Helen M. Berman Rutgers, The State University of New Jersey
Brian K. Shoichet
Brian K. Shoichet University of California, San Francisco

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