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Andrzej Kolinski

Andrzej Kolinski

D-Index & Metrics

Chemistry

D-Index
68
Citations
17096
World Ranking
6500
National Ranking
13

Research.com Recognitions

  • 2009 - Prize of the Foundation for Polish Science - Nagroda Fundacji na rzecz Nauki Polskiej for development and practical application of unique methods for protein structure prediction

Overview

Andrzej Kolinski is affiliated with the University of Warsaw in Poland, with research focused primarily within Biochemistry, Genetics and Molecular Biology, as well as Materials Science. Their subfields of study include Molecular Biology, Materials Chemistry, Genetics, Biomedical Engineering, and Computational Theory and Mathematics.

The main research topics covered by Kolinski include Protein Structure and Dynamics, Enzyme Structure and Function, RNA and protein synthesis mechanisms, Bacterial Genetics and Biotechnology, Biofuel production and bioconversion, Computational Drug Discovery Methods, and Chemical Synthesis and Analysis.

Kolinski has contributed to a range of publications appearing frequently in the following venues:

  • Methods in molecular biology
  • Protein Science
  • International Journal of Molecular Sciences
  • PLoS Computational Biology
  • International Journal of Biological Macromolecules

Selected recent papers authored or co-authored by Kolinski include:

  • "Protocols for Fast Simulations of Protein Structure Flexibility Using CABS-Flex and SURPASS," 2020, Methods in molecular biology
  • "Exploring protein functions from structural flexibility using CABS-flex modeling," 2024, Protein Science
  • "Protein-Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations," 2021, International Journal of Molecular Sciences
  • "Protocols for All-Atom Reconstruction and High-Resolution Refinement of Protein-Peptide Complex Structures," 2020, Methods in molecular biology
  • "Integrative modeling of diverse protein-peptide systems using CABS-dock," 2023, PLoS Computational Biology

Frequent collaborators with whom Kolinski has published include Sebastian Kmiecik, Aleksandra E. Badaczewska-Dawid, Mateusz Zalewski, Mateusz Kurciński, and Wojciech Puławski.

In 2009, Kolinski received the Prize of the Foundation for Polish Science (Nagroda Fundacji na rzecz Nauki Polskiej) for the development and practical application of unique methods for protein structure prediction.

Best Publications

  • AAindex: amino acid index database, progress report 2008

    Shuichi Kawashima;Piotr Pokarowski;Maria Pokarowska;Andrzej Kolinski

  • Coarse-Grained Protein Models and Their Applications

    Sebastian Kmiecik;Dominik Gront;Michal Kolinski;Lukasz Wieteska;Lukasz Wieteska

  • Topology fingerprint approach to the inverse protein folding problem.

    Adam Godzik;Andrzej Kolinski;Andrzej Kolinski;Jeffrey Skolnick

  • CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site

    Mateusz Kurcinski;Michal Jamroz;Maciej Blaszczyk;Andrzej Kolinski

  • Simulations of the folding of a globular protein

    Jeffrey Skolnick;Andrzej Kolinski

  • Monte carlo simulations of protein folding. I. Lattice model and interaction scheme

    Andrzej Kolinski;Andrzej Kolinski;Jeffrey Skolnick

  • Protein modeling and structure prediction with a reduced representation.

    Andrzej Kolinski

  • TOUCHSTONE II: a new approach to ab initio protein structure prediction.

    Yang Zhang;Andrzej Kolinski;Andrzej Kolinski;Jeffrey Skolnick

  • MONSSTER: a method for folding globular proteins with a small number of distance restraints

    Jeffrey Skolnick;Andrzej Kolinski;Andrzej Kolinski;Angel R. Ortiz

  • Structural Genomics and Its Importance for Gene Function Analysis

    Jeffrey Skolnick;Jacquelyn S. Fetrow;Andrzej Kolinski

  • Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct

    Jeffrey Skolnick;Lukasz Jaroszewski;Andrzej Kolinski;Adam Godzik

  • Reduced models of proteins and their applications

    Andrzej Kolinski;Andrzej Kolinski;Jeffrey Skolnick

  • Dynamic Monte Carlo simulations of a new lattice model of globular protein folding, structure and dynamics

    Jeffrey Skolnick;Andrzej Kolinski

  • A general method for the prediction of the three dimensional structure and folding pathway of globular proteins: Application to designed helical proteins

    Andrzej Kolinski;Adam Godzik;Jeffrey Skolnick

  • Assessing energy functions for flexible docking

    Michal Vieth;Jonathan D. Hirst;Andrzej Kolinski;Charles L. Brooks

  • Ab initio folding of proteins using restraints derived from evolutionary information.

    Angel R. Ortiz;Andrzej Kolinski;Andrzej Kolinski;Piotr Rotkiewicz;Piotr Rotkiewicz;Bartosz Ilkowski;Bartosz Ilkowski

  • CABS-flex: server for fast simulation of protein structure fluctuations

    Michal Jamroz;Andrzej Kolinski;Sebastian Kmiecik

  • TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints

    Daisuke Kihara;Hui Lu;Andrzej Kolinski;Andrzej Kolinski;Jeffrey Skolnick

  • Monte carlo simulations of protein folding. II. Application to protein A, ROP, and crambin

    Andrzej Kolinski;Jeffrey Skolnick

  • Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets

    Adam Godzik;Andrzej Koliński;Andrzej Koliński;Jeffrey Skolnick

  • Discretized model of proteins. I. Monte Carlo study of cooperativity in homopolypeptides

    Andrzej Kolinski;Jeffrey Skolnick

Frequent Co-Authors

Jeffrey Skolnick
Jeffrey Skolnick Georgia Institute of Technology
Robert L. Jernigan
Robert L. Jernigan Iowa State University
Adam Godzik
Adam Godzik University of California, Riverside
Charles L. Brooks
Charles L. Brooks University of Michigan–Ann Arbor
Daisuke Kihara
Daisuke Kihara Purdue University West Lafayette
Yang Zhang
Yang Zhang University of Michigan–Ann Arbor
Leszek Rychlewski
Leszek Rychlewski BioInfoBank Institute
Krzysztof Ginalski
Krzysztof Ginalski University of Warsaw
Hector F. DeLuca
Hector F. DeLuca University of Wisconsin–Madison

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