Yasubumi Sakakibara

Yasubumi Sakakibara publication distribution in Engineering and Technology in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Engineering and Technology in 2026. The highlighted bar marks where Yasubumi Sakakibara sits on this spectrum.

Yasubumi Sakakibara D-index placement in Engineering and Technology in 2026

The chart shows the D-index (discipline H-index) distribution of Engineering and Technology scientists ranked by Research.com in 2026. The highlighted bar marks where Yasubumi Sakakibara sits on this spectrum.

Overview

Best Publications

• Stochastic context-free grammars for tRNA modeling.

  Sakakibara Y;Brown M;Hughey R;Mian Is

  574
  Citations

• RNA secondary structure prediction using deep learning with thermodynamic integration

  Kengo Sato;Manato Akiyama;Yasubumi Sakakibara

  469
  Citations

• Efficient learning of context-free grammars from positive structural examples

  Yasubumi Sakakibara

  288
  Citations

• Learning context-free grammars from structural data in polynomial time

  Yasubumi Sakakibara

  261
  Citations

• Recent advances of grammatical inference

  Yasubumi Sakakibara

  245
  Citations

• Convolutional neural network based on SMILES representation of compounds for detecting chemical motif.

  Maya Hirohara;Yutaka Saito;Yuki Koda;Kengo Sato

  206
  Citations

• Statistical prediction of protein–chemical interactions based on chemical structure and mass spectrometry data

  Nobuyoshi Nagamine;Yasubumi Sakakibara

  135
  Citations

• Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data.

  Vasanthan Jayakumar;Yasubumi Sakakibara

  122
  Citations

• Chaperone Therapy for Neuronopathic Lysosomal Diseases: Competitive Inhibitors as Chemical Chaperones for Enhancement of Mutant Enzyme Activities:

  Yoshiyuki Suzuki;Seiichiro Ogawa;Yasubumi Sakakibara

  117
  Citations

• MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning

  Afiahayati;Kengo Sato;Yasubumi Sakakibara

  115
  Citations

• Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures

  Hiroshi Matsui;Kengo Sato;Yasubumi Sakakibara

  111
  Citations

• Building of a document classification tree by recursive optimization of keyword selection function

  Yasubumi Sakakibara;Kazuo Misue

  111
  Citations

• Grammatical inference in bioinformatics

  Y. Sakakibara

  110
  Citations

• Convolutional neural networks for classification of alignments of non-coding RNA sequences.

  Genta Aoki;Yasubumi Sakakibara

  105
  Citations

• DNA Computing and Molecular Programming

  Yasubumi Sakakibara;Yongli Mi

  85
  Citations

• Pair hidden Markov models on tree structures.

  Yasubumi Sakakibara

  82
  Citations

• Learning context-free grammars using tabular representations

  Yasubumi Sakakibara

  80
  Citations

• Learning Context-Free Grammars from Partially Structured Examples

  Yasubumi Sakakibara;Hidenori Muramatsu

  74
  Citations

• Identifying cooperative transcriptional regulations using protein-protein interactions.

  Nobuyoshi Nagamine;Yuji Kawada;Yasubumi Sakakibara

  64
  Citations

• GA-based Learning of Context-Free Grammars using Tabular Representations

  Yasubumi Sakakibara;Mitsuhiro Kondo

  60
  Citations

• On learning from queries and counterexamples in the presence of noise

  Yasubumi Sakakibara

  50
  Citations

• DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.

  Kengo Sato;Yuki Kato;Tatsuya Akutsu;Kiyoshi Asai

  40
  Citations

• Performance of a deep learning-based identification system for esophageal cancer from CT images.

  Masashi Takeuchi;Takumi Seto;Masahiro Hashimoto;Nao Ichihara

  34
  Citations

• Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars

  Yasubumi Sakakibara;Michael Brown;Richard Hughey;I. Saira Mian

  33
  Citations

• Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

  Kris Popendorf;Hachiya Tsuyoshi;Yasunori Osana;Yasubumi Sakakibara

  33
  Citations

• Erratum: Accurate identification of orthologous segments among multiple genomes (Bioinformatics (2009) vol. 25 (7) (853-860))

  Tsuyoshi Hachiya;Yasunori Osana;Kris Popendorf;Yasubumi Sakakibara

  0
  Citations