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Genetics

D-Index
91
Citations
59165
World Ranking
1020
National Ranking
85

Molecular Biology

D-Index
91
Citations
59165
World Ranking
712
National Ranking
61

Overview

Vladimir Benes is affiliated with the European Bioinformatics Institute in the United Kingdom. Their research spans multiple fields within the life sciences, with a primary focus on biochemistry, genetics, and molecular biology, as well as medicine. Their work delves into several subfields, including molecular biology, immunology, infectious diseases, genetics, and oncology.

The main topics covered in Vladimir Benes's research include:

  • Single-cell and spatial transcriptomics
  • RNA research and splicing
  • RNA and protein synthesis mechanisms
  • Immune cell function and interaction
  • Gut microbiota and health
  • Genomics and phylogenetic studies
  • Immune cells in cancer

Selected recent publications by Vladimir Benes include:

  • "The Digital MIQE Guidelines Update: Minimum Information for Publication of Quantitative Digital PCR Experiments for 2020" (2020) published in Clinical Chemistry
  • "Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community" (2021) published in Nature Microbiology
  • "A faecal microbiota signature with high specificity for pancreatic cancer" (2022) published in Gut
  • "Drivers and determinants of strain dynamics following fecal microbiota transplantation" (2022) published in Nature Medicine
  • "Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states" (2021) published in Nature Immunology

Frequent coauthors collaborating with Vladimir Benes include:

  • Jonathan J. M. Landry (31 publications)
  • Laura Villacorta (17 publications)
  • Tobias Rausch (17 publications)
  • Jan Provazník (17 publications)
  • Nayara Azevedo (17 publications)

Their research outputs are commonly published in venues such as:

  • bioRxiv (Cold Spring Harbor Laboratory) with 41 publications
  • Blood, 9 publications
  • Nature Communications, 8 publications
  • SSRN Electronic Journal, 7 publications
  • Frontiers in Immunology, 4 publications

Best Publications

  • The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

    Stephen A. Bustin;Vladimir Benes;Jeremy A. Garson;Jan Hellemans

  • The Genome Sequence of the Malaria Mosquito Anopheles gambiae

    Robert A. Holt;G. Mani Subramanian;Aaron Halpern;Granger G. Sutton

  • DELLY: structural variant discovery by integrated paired-end and split-read analysis

    Tobias Rausch;Thomas Zichner;Andreas Schlattl;Adrian M. Stütz

  • Quantitative real-time RT-PCR – a perspective

    S A Bustin;V Benes;T Nolan;M W Pfaffl

  • Replicative senescence of mesenchymal stem cells: a continuous and organized process.

    Wolfgang Wagner;Patrick Horn;Mirco Castoldi;Anke Diehlmann

  • Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

    K. Mayer;C. Schüller;R. Wambutt;G. Murphy

  • Potential of fecal microbiota for early‐stage detection of colorectal cancer

    Georg Zeller;Julien Tap;Anita Y Voigt;Shinichi Sunagawa

  • Cyclical DNA methylation of a transcriptionally active promoter

    Raphaël Métivier;Rozenn Gallais;Christophe Tiffoche;Christine Le Péron

  • Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana

    M. Bevan;I. Bancroft;E. Bent

  • Accounting for technical noise in single-cell RNA-seq experiments

    Philip Brennecke;Simon Anders;Jong Kyoung Kim;Aleksandra A Kołodziejczyk;Aleksandra A Kołodziejczyk

  • Dissecting the genomic complexity underlying medulloblastoma

    David T. W. Jones;Natalie Jäger;Marcel Kool;Thomas Zichner

  • Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)

    Andrea Cossarizza;Hyun Dong Chang;Andreas Radbruch;Andreas Acs

  • Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations

    Tobias Rausch;David T.W. Jones;Marc Zapatka;Adrian M. Stütz

  • The Digital MIQE Guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments

    Jim F. Huggett;Carole A. Foy;Vladimir Benes;Kerry Emslie

  • Transient cyclical methylation of promoter DNA

    Sara Kangaspeska;Brenda Stride;Raphaël Métivier;Maria Polycarpou-Schwarz

  • Systematic gain-of-function genetics in Drosophila

    Pernille Rørth;Kornelia Szabo;Adina Bailey;Todd Laverty

  • A sensitive array for microRNA expression profiling (miChip) based on locked nucleic acids (LNA).

    Mirco Castoldi;Sabine Schmidt;Vladimir Benes;Mikkel Noerholm

  • MicroRNA signatures predict oestrogen receptor, progesterone receptor and HER2/ neu receptor status in breast cancer

    Aoife J Lowery;Nicola Miller;Amanda Devaney;Roisin E McNeill

  • Durable coexistence of donor and recipient strains after fecal microbiota transplantation.

    Simone S. Li;Ana Zhu;Vladimir Benes;Paul I. Costea

  • Aging and replicative senescence have related effects on human stem and progenitor cells.

    Wolfgang Wagner;Wolfgang Wagner;Simone Bork;Patrick Horn;Damir Krunic

Frequent Co-Authors

Wilhelm Ansorge
Wilhelm Ansorge École Polytechnique Fédérale de Lausanne
Martina U. Muckenthaler
Martina U. Muckenthaler Heidelberg University
Jan O. Korbel
Jan O. Korbel European Molecular Biology Laboratory
Andreas E. Kulozik
Andreas E. Kulozik Heidelberg University
Šárka Pospíšilová
Šárka Pospíšilová Masaryk University
Matthias W. Hentze
Matthias W. Hentze European Molecular Biology Laboratory
Michael W. Pfaffl
Michael W. Pfaffl Technical University of Munich
Anthony D. Ho
Anthony D. Ho University Hospital Heidelberg
Peer Bork
Peer Bork European Molecular Biology Laboratory
Jo Vandesompele
Jo Vandesompele Ghent University

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