D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Molecular Biology D-index 74 Citations 22,113 193 World Ranking 748 National Ranking 411

Overview

What is he best known for?

The fields of study he is best known for:

  • Enzyme
  • Gene
  • DNA

Barry L. Stoddard focuses on Biochemistry, Homing endonuclease, Stereochemistry, DNA and Genetics. His study in Homing endonuclease is interdisciplinary in nature, drawing from both Base pair and Intein. The Stereochemistry study combines topics in areas such as Protein structure, Protein design, Catalysis, Substrate and Ribozyme.

Barry L. Stoddard focuses mostly in the field of Protein structure, narrowing it down to matters related to Binding site and, in some cases, C2 domain. His DNA research is multidisciplinary, incorporating elements of Cleavage and Sense strand. Barry L. Stoddard works mostly in the field of Genetics, limiting it down to concerns involving Endodeoxyribonucleases and, occasionally, Peptide sequence.

His most cited work include:

  • Design of a Novel Globular Protein Fold with Atomic-Level Accuracy (1281 citations)
  • De novo computational design of retro-aldol enzymes. (889 citations)
  • Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction (599 citations)

What are the main themes of his work throughout his whole career to date?

Barry L. Stoddard spends much of his time researching Homing endonuclease, Biochemistry, Genetics, DNA and Endonuclease. His Homing endonuclease research incorporates elements of Molecular biology, Protein engineering and Endodeoxyribonucleases. His research integrates issues of Genome editing, Peptide sequence and Protein design in his study of Protein engineering.

The various areas that Barry L. Stoddard examines in his DNA study include Cleavage, Computational biology and Binding site. His research in Binding site tackles topics such as Stereochemistry which are related to areas like Active site, Substrate and Hydrolase. Barry L. Stoddard interconnects Homologous recombination, RNA splicing, Intein and Sequence alignment in the investigation of issues within Endonuclease.

He most often published in these fields:

  • Homing endonuclease (33.00%)
  • Biochemistry (28.08%)
  • Genetics (27.09%)

What were the highlights of his more recent work (between 2014-2021)?

  • Computational biology (15.76%)
  • Meganuclease (10.34%)
  • Genetics (27.09%)

In recent papers he was focusing on the following fields of study:

Computational biology, Meganuclease, Genetics, Protein engineering and DNA are his primary areas of study. His Meganuclease study deals with the bigger picture of Biochemistry. His Protein engineering research integrates issues from Biophysics, Protein design, Protein sequencing and Tandem repeat.

His study on Protein design is covered under Protein structure. The study incorporates disciplines such as Genome and Binding site in addition to DNA. His research in Binding site intersects with topics in Peptide sequence, Stereochemistry and Plasma protein binding.

Between 2014 and 2021, his most popular works were:

  • Biocontainment of genetically modified organisms by synthetic protein design (224 citations)
  • Computational protein design enables a novel one-carbon assimilation pathway (155 citations)
  • De novo design of a fluorescence-activating β-barrel (115 citations)

In his most recent research, the most cited papers focused on:

  • Enzyme
  • Gene
  • DNA

Barry L. Stoddard mostly deals with Protein engineering, Computational biology, Protein structure, Protein design and DNA. His Computational biology research includes themes of Microbiome, Nucleic acid, MEDLINE, Cas9 and Metagenomics. His Protein structure research is multidisciplinary, relying on both Biophysics, Ligand, Protein family, Cell biology and Regulation of gene expression.

His Protein design research includes elements of Leucine-rich repeat, Stereochemistry and Chou–Fasman method. His DNA study necessitates a more in-depth grasp of Biochemistry. His work in Base pair covers topics such as Genome engineering which are related to areas like Meganuclease, Point mutation, Cleavage and Homing endonuclease.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

Brian A Kuhlman;Gautam Dantas;Gregory C. Ireton;Gabriele Varani.
Science (2003)

1896 Citations

De novo computational design of retro-aldol enzymes.

Lin Jiang;Eric A. Althoff;Fernando R. Clemente;Lindsey Doyle.
Science (2008)

1271 Citations

Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction

Justin B. Siegel;Alexandre Zanghellini;Helena M. Lovick;Gert Kiss.
Science (2010)

966 Citations

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes

Richard J. Roberts;Marlene Belfort;Timothy Bestor;Ashok S. Bhagwat.
Nucleic Acids Research (2003)

825 Citations

The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target

Amanda Nga Sze Mak;Philip Bradley;Raul A. Cernadas;Adam J. Bogdanove.
Science (2012)

650 Citations

Homing endonuclease structure and function.

Barry L. Stoddard.
Quarterly Reviews of Biophysics (2006)

617 Citations

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility

Brett S. Chevalier;Barry L. Stoddard.
Nucleic Acids Research (2001)

598 Citations

Capturing the Structure of a Catalytic RNA Intermediate: The Hammerhead Ribozyme

William G. Scott;James B. Murray;John R. P. Arnold;Barry L. Stoddard.
Science (1996)

579 Citations

The allosteric regulation of pyruvate kinase by fructose-1,6-bisphosphate.

Melissa S Jurica;Andrew Mesecar;Patrick J Heath;Wuxian Shi.
Structure (1998)

455 Citations

Computational Thermostabilization of an Enzyme

Aaron Korkegian;Margaret E. Black;David Baker;Barry L. Stoddard.
Science (2005)

433 Citations

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