Jonathan M. Carlson

Overview

Best Publications

• The major genetic determinants of HIV-1 control affect HLA class I peptide presentation

  Pereyra F;Jia X;McLaren Pj

  1679
  Citations

• Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

  Morgane Rolland;Paul T. Edlefsen;Brendan B. Larsen;Sodsai Tovanabutra

  488
  Citations

• NATURALLY OCCURRING DOMINANT RESISTANCE MUTATIONS TO HEPATITIS C VIRUS PROTEASE AND POLYMERASE INHIBITORS IN TREATMENT-NAIVE PATIENTS

  Thomas Kuntzen;Joerg Timm;Andrew Berical;Niall Lennon

  438
  Citations

• HIV-1 adaptation to NK-cell-mediated immune pressure

  Galit Alter;David Heckerman;Arne Schneidewind;Lena Fadda

  434
  Citations

• Influence of HLA-C Expression Level on HIV Control

  Richard Apps;Richard Apps;Ying Qi;Ying Qi;Jonathan M. Carlson;Haoyan Chen;Haoyan Chen

  407
  Citations

• Founder effects in the assessment of HIV polymorphisms and HLA allele associations.

  Tanmoy Bhattacharya;Tanmoy Bhattacharya;Marcus Daniels;David Heckerman;Brian Foley

  321
  Citations

• Selection bias at the heterosexual HIV-1 transmission bottleneck

  Jonathan M. Carlson;Malinda Schaefer;Daniela C. Monaco;Rebecca Batorsky

  304
  Citations

• Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients

  Paul A. Goepfert;Wendy Lumm;Paul Farmer;Philippa Matthews

  267
  Citations

• Evidence of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1

  Zabrina L Brumme;Zabrina L Brumme;Zabrina L Brumme;Chanson J Brumme;Chanson J Brumme;David Heckerman;Bette T Korber;Bette T Korber

  218
  Citations

• Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection

  Alasdair Leslie;Philippa C. Matthews;Jennifer Listgarten;Jonathan M. Carlson

  204
  Citations

• Marked Epitope- and Allele-Specific Differences in Rates of Mutation in Human Immunodeficiency Type 1 (HIV-1) Gag, Pol, and Nef Cytotoxic T-Lymphocyte Epitopes in Acute/Early HIV-1 Infection

  Zabrina L. Brumme;Chanson J. Brumme;Jonathan Carlson;Jonathan Carlson;Hendrik Streeck

  204
  Citations

• HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins

  Zabrina L. Brumme;Zabrina L. Brumme;Mina John;Jonathan M. Carlson;Chanson J. Brumme

  200
  Citations

• A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

  István Bartha;Jonathan M Carlson;Chanson J Brumme;Paul J McLaren;Paul J McLaren;Paul J McLaren

  198
  Citations

• Central Role of Reverting Mutations in HLA Associations with Human Immunodeficiency Virus Set Point

  Philippa C. Matthews;Andrew Prendergast;Alasdair Leslie;Hayley Crawford

  185
  Citations

• HLA Class-I Driven Evolution of Human Immunodeficiency Virus Type 1 Subtype C Proteome: Immune Escape and Viral Load

  Christine M. Rousseau;Marcus G. Daniels;Jonathan M. Carlson;Jonathan M. Carlson;Carl Kadie

  176
  Citations

• Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag.

  Jonathan M. Carlson;Jonathan M. Carlson;Zabrina L. Brumme;Christine M. Rousseau;Chanson J. Brumme

  167
  Citations

• Early Selection in Gag by Protective HLA Alleles Contributes to Reduced HIV-1 Replication Capacity That May Be Largely Compensated for in Chronic Infection

  Mark A. Brockman;Mark A. Brockman;Mark A. Brockman;Zabrina L. Brumme;Zabrina L. Brumme;Zabrina L. Brumme;Chanson J. Brumme;Chanson J. Brumme;Toshiyuki Miura;Toshiyuki Miura

  161
  Citations

• A large-scale database of T-cell receptor beta (TCRβ) sequences and binding associations from natural and synthetic exposure to SARS-CoV-2

  Sean Nolan;Marissa Vignali;Mark Klinger;Jennifer N Dines

  159
  Citations

• Genetic Characterization of Human Immunodeficiency Virus Type 1 in Elite Controllers: Lack of Gross Genetic Defects or Common Amino Acid Changes

  Toshiyuki Miura;Mark A. Brockman;Chanson J. Brumme;Zabrina L. Brumme

  158
  Citations

• Elevated HLA-A expression impairs HIV control through inhibition of NKG2A-expressing cells

  Veron Ramsuran;Vivek Naranbhai;Amir Horowitz;Ying Qi

  147
  Citations

• CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants.

  Kalpana Dommaraju;Gustavo Kijak;Jonathan M. Carlson;Brendan B. Larsen

  10
  Citations

• Genetic Selection Bias at the Heterosexual HIV-1 Transmission Bottleneck

  J Carlson;D Monaco;M Schaefer;D Claiborne

  0
  Citations