World's Best Scientists 2026 revealed!
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Microbiology
USA
2026

D-Index & Metrics

Microbiology

D-Index
129
Citations
98570
World Ranking
79
National Ranking
39

Genetics

D-Index
127
Citations
95803
World Ranking
283
National Ranking
147

Research.com Recognitions

  • 2026 - Research.com Microbiology in United States Leader Award
  • 2025 - Research.com Microbiology in United States Leader Award

Overview

Nikos C. Kyrpides is affiliated with the Joint Genome Institute in the United States. Their research primarily focuses on biochemistry, genetics, and molecular biology with substantial contributions also in environmental science. The scientist's work spans multiple subfields, including molecular biology, ecology, plant science, oceanography, and astronomy and astrophysics.

A significant aspect of their scholarly output involves topics such as genomics and phylogenetic studies, microbial community ecology and physiology, bacteriophages and microbial interactions, as well as plant virus research studies. Other areas include geophysics and gravity measurements, ionosphere and magnetosphere dynamics, and astrophysics and cosmic phenomena.

The scientist has published extensively in various scientific journals, with frequent contributions to the following venues:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Microbiology Resource Announcements
  • OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)
  • Nucleic Acids Research
  • Zenodo (CERN European Organization for Nuclear Research)

Frequent collaborators include Natalia Ivanova, Simon Roux, T. B. K. Reddy, Tanja Woyke, and Emiley A. Eloe-Fadrosh. These coauthors have worked jointly on numerous publications, contributing to the scientist's broad research network.

Representative recent papers authored or coauthored by the scientist are:

  • "CheckV assesses the quality and completeness of metagenome-assembled viral genomes", 2020, Nature Biotechnology
  • "A unified catalog of 204,938 reference genomes from the human gut microbiome", 2020, Nature Biotechnology
  • "Identification of mobile genetic elements with geNomad", 2023, Nature Biotechnology
  • "Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome", 2021, Nature Microbiology
  • "The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities", 2020, Nucleic Acids Research

Best Publications

  • Structure, function and diversity of the healthy human microbiome

    Curtis Huttenhower;Curtis Huttenhower;Dirk Gevers;Rob Knight;Rob Knight;Sahar Abubucker

  • A framework for human microbiome research

    Barbara A. Methé;Karen E. Nelson;Mihai Pop;Heather H. Creasy

  • Insights into the phylogeny and coding potential of microbial dark matter

    Christian Rinke;Patrick Schwientek;Alexander Sczyrba;Alexander Sczyrba;Natalia N. Ivanova

  • Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Robert M. Bowers;Nikos C. Kyrpides;Ramunas Stepanauskas;Miranda Harmon-Smith

  • The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

    Hans-Peter Klenk;Rebecca A. Clayton;Jean-Francois Tomb;Owen White

  • CheckV assesses the quality and completeness of metagenome-assembled viral genomes.

    Stephen Nayfach;Antonio Pedro Camargo;Frederik Schulz;Emiley Eloe-Fadrosh

  • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.

    Falk Warnecke;Peter Luginbühl;Natalia Ivanova;Majid Ghassemian

  • Protein interaction maps for complete genomes based on gene fusion events

    Anton J. Enright;Ioannis Iliopoulos;Nikos C. Kyrpides;Christos A. Ouzounis

  • IMG: the integrated microbial genomes database and comparative analysis system

    Victor M. Markowitz;I-Min A. Chen;Krishna Palaniappan;Ken Chu

  • The minimum information about a genome sequence (MIGS) specification.

    Dawn Field;George Garrity;Tanya Gray;Norman Morrison

  • A unified catalog of 204,938 reference genomes from the human gut microbiome.

    Alexandre Almeida;Alexandre Almeida;Stephen Nayfach;Stephen Nayfach;Miguel Boland;Francesco Strozzi

  • IMG ER

    Victor M. Markowitz;Konstantinos Mavromatis;Natalia N. Ivanova;I-Min A. Chen

  • Programmed DNA destruction by miniature CRISPR-Cas14 enzymes.

    Lucas B. Harrington;David Burstein;Janice S. Chen;David Paez-Espino

  • Uncovering Earth’s virome

    David Paez-Espino;Emiley A. Eloe-Fadrosh;Georgios A. Pavlopoulos;Alex D. Thomas

  • CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

    Charles Bland;Teresa L. Ramsey;Fareedah Sabree;Micheal Lowe

  • A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

    Dongying Wu;Dongying Wu;Philip Hugenholtz;Konstantinos Mavromatis;Rüdiger Pukall

  • Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis

    Natalia Ivanova;Alexei Sorokin;Iain Anderson;Nathalie Galleron

  • The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

    Ioanna Pagani;Konstantinos Liolios;Jakob Jansson;I-Min A. Chen

  • Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

    S. Y. Gerdes;M. D. Scholle;J. W. Campbell;G. Balázsi

  • A genomic catalog of Earth’s microbiomes

    Stephen Nayfach;Simon Roux;Rekha Seshadri;Daniel Udwary

  • Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

    Héctor García Martín;Natalia Ivanova;Victor Kunin;Falk Warnecke

Frequent Co-Authors

Natalia Ivanova
Natalia Ivanova Lawrence Berkeley National Laboratory
Lynne Goodwin
Lynne Goodwin Los Alamos National Laboratory
Miriam Land
Miriam Land Oak Ridge National Laboratory
Tanja Woyke
Tanja Woyke Joint Genome Institute
Cliff Han
Cliff Han Los Alamos National Laboratory
Jonathan A. Eisen
Jonathan A. Eisen University of California, Davis
John C. Detter
John C. Detter Los Alamos National Laboratory
Loren Hauser
Loren Hauser Digital Infuzion (United States)
Alla Lapidus
Alla Lapidus Saint Petersburg State University
Amrita Pati
Amrita Pati Amgen (United States)

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