His main research concerns Genetics, Genome, Metagenomics, Computational biology and Phylogenetics. His CRISPR research extends to the thematically linked field of Genome. The concepts of his Metagenomics study are interwoven with issues in Evolutionary biology, Phylum, Data management and Glycoside hydrolase.
His Phylum research incorporates elements of Taxonomy and Synergistetes. In Computational biology, Philip Hugenholtz works on issues like Sequence analysis, which are connected to Whole genome sequencing and Nucleic acid sequence. His research integrates issues of Feces, Shotgun sequencing, Phylogenetic tree, Microbial ecology and Archaea in his study of Phylogenetics.
Philip Hugenholtz focuses on Genome, Genetics, Whole genome sequencing, Gene and Archaea. The study incorporates disciplines such as Metagenomics, Phylum, Bacteria and Computational biology in addition to Genome. His work deals with themes such as Microbiome, Ecology and Microbial ecology, which intersect with Metagenomics.
As a member of one scientific family, Philip Hugenholtz mostly works in the field of Bacteria, focusing on Microbiology and, on occasion, 16S ribosomal RNA. Genetics is closely attributed to Type species in his work. In his study, Evolutionary biology is inextricably linked to Phylogenetics, which falls within the broad field of Phylogenetic tree.
Philip Hugenholtz mainly focuses on Genome, Evolutionary biology, Microbiome, Metagenomics and Phylum. A significant part of his Genome research incorporates Gene and Genetics studies. In his study, Bacterial genome size and Gracilicutes is strongly linked to Phylogenetics, which falls under the umbrella field of Evolutionary biology.
His Microbiome study combines topics in areas such as Respiratory disease, Immunology and Bronchiectasis. His Metagenomics research also works with subjects such as
Genome, Metagenomics, Microbiome, Evolutionary biology and Phylogenetics are his primary areas of study. His Genome research is multidisciplinary, relying on both Bacterial genetics, Taxonomy and Bacteria. Genetics and Gene are the main areas of his Metagenomics studies.
Philip Hugenholtz is interested in Phylogenetic tree, which is a branch of Genetics. He interconnects Earth Microbiome Project, Immunology and Biome in the investigation of issues within Microbiome. His Evolutionary biology study combines topics from a wide range of disciplines, such as Phylum, Citizen science, Archaea and Open research.
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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Todd Z. DeSantis;Philip Hugenholtz;Neils Larsen;Mark Rojas.
Applied and Environmental Microbiology (2006)
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald;Morgan N Price;Julia Goodrich;Julia Goodrich;Eric P Nawrocki.
The ISME Journal (2012)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H Parks;Michael Imelfort;Connor T Skennerton;Philip Hugenholtz.
Genome Research (2015)
Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity
Philip Hugenholtz;Brett M. Goebel;Norman R. Pace.
Journal of Bacteriology (1998)
Community structure and metabolism through reconstruction of microbial genomes from the environment
Gene W. Tyson;Jarrod Chapman;Jarrod Chapman;Philip Hugenholtz;Eric E. Allen.
STAMP: statistical analysis of taxonomic and functional profiles
Donovan H. Parks;Gene W. Tyson;Philip Hugenholtz;Robert G. Beiko.
Comparative Metagenomics of Microbial Communities
Susannah Green Tringe;Christian von Mering;Arthur Kobayashi;Asaf A. Salamov.
Defining the core Arabidopsis thaliana root microbiome
Derek S. Lundberg;Sarah L. Lebeis;Sur Herrera Paredes;Scott Yourstone.
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
Thomas Huber;Geoffrey Faulkner;Philip Hugenholtz.
Insights into the phylogeny and coding potential of microbial dark matter
Christian Rinke;Patrick Schwientek;Alexander Sczyrba;Alexander Sczyrba;Natalia N. Ivanova.
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