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Molecular Biology

D-Index
50
Citations
15688
World Ranking
2533
National Ranking
1248

Overview

Amrita Pati is a researcher affiliated with Amgen in the United States, specializing in medicine with a focus on oncology and molecular biology. Their work spans across multiple subfields such as pulmonary and respiratory medicine, plant science, and ecology.

The scientist's research topics include:

  • Colorectal Cancer Treatments and Studies
  • Lung Cancer Research Studies
  • Cancer therapeutics and mechanisms
  • Peptidase Inhibition and Analysis
  • Lung Cancer Treatments and Mutations
  • Cytokine Signaling Pathways and Interactions
  • PI3K/AKT/mTOR signaling in cancer

Some of the frequent venues where Amrita Pati publishes include:

  • Journal of Clinical Oncology
  • Cancer Research
  • Nature Medicine
  • Frontiers in Microbiology
  • Advances in Computing and Engineering

The scientist has collaborated often with peers such as Antreas Hindoyan, Anita Reddy, Luis Paz-Ares, Lata Mukundan, and Natalia Ivanova.

Selected recent publications include:

  • "Tarlatamab, a First-in-Class DLL3-Targeted Bispecific T-Cell Engager, in Recurrent Small-Cell Lung Cancer: An Open-Label, Phase I Study," 2023, Journal of Clinical Oncology
  • "Molecular determinants of sotorasib clinical efficacy in KRASG12C-mutated non-small-cell lung cancer," 2025, Nature Medicine
  • "The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host," 2022, Frontiers in Microbiology
  • "Computing Genomic Signatures Using de Bruijn Chains," 2021, Advances in Computing and Engineering
  • "ProDeGe: a computational protocol for fully automated decontamination of genomes," 2020, UNC Libraries

Best Publications

  • A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

    Dongying Wu;Dongying Wu;Philip Hugenholtz;Konstantinos Mavromatis;Rüdiger Pukall

  • Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.

    Peter Cimermancic;Marnix H. Medema;Jan Claesen;Kenji Kurita

  • Minimum Information about a Biosynthetic Gene cluster.

    Marnix H. Medema;Marnix H. Medema;Renzo Kottmann;Pelin Yilmaz;Matthew Cummings

  • A Catalog of Reference Genomes from the Human Microbiome

    Karen E. Nelson;George M. Weinstock;Sarah K. Highlander

  • Microbial species delineation using whole genome sequences

    Neha J. Varghese;Supratim Mukherjee;Natalia Ivanova;Konstantinos T. Konstantinidis

  • IMG 4 version of the integrated microbial genomes comparative analysis system

    Victor M. Markowitz;I-Min A. Chen;Krishna Palaniappan;Ken Chu

  • Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy.

    Jan P. Meier-Kolthoff;Richard L. Hahnke;Jörn Petersen;Carmen Scheuner

  • GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

    Amrita Pati;Natalia N Ivanova;Natalia Mikhailova;Galina Ovchinnikova

  • The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

    Marcel Huntemann;Natalia N. Ivanova;Konstantinos Mavromatis;Konstantinos Mavromatis;H. James Tripp

  • IMG/M 4 version of the integrated metagenome comparative analysis system.

    Victor M. Markowitz;I-Min A. Chen;Ken Chu;Ernest Szeto

  • The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea

    Irene Wagner-Döbler;Britta Ballhausen;Martine Berger;Thorsten Brinkhoff

  • 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

    Supratim Mukherjee;Rekha Seshadri;Neha J. Varghese;Emiley A. Eloe-Fadrosh

  • Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

    Matthew L. Bendall;Sarah L.R. Stevens;Leong Keat Chan;Stephanie Malfatti

  • Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

    Emiley A. Eloe-Fadrosh;David Paez-Espino;Jessica Jarett;Peter F. Dunfield

  • Stop codon reassignments in the wild

    Natalia N. Ivanova;Patrick Schwientek;H. James Tripp;Christian Rinke

  • Large-scale contamination of microbial isolate genomes by Illumina PhiX control

    Supratim Mukherjee;Marcel Huntemann;Natalia Ivanova;Nikos C Kyrpides;Nikos C Kyrpides

  • Genomic Potential of Marinobacter aquaeolei, a Biogeochemical “Opportunitroph”

    Esther Singer;Eric A. Webb;William C. Nelson;John F. Heidelberg

  • Complete genome sequence of Kytococcus sedentarius type strain (541T)

    David Sims;Thomas Brettin;Thomas Brettin;John C. Detter;Cliff Han

  • Genome Sequence of “Candidatus Frankia datiscae” Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata

    Tomas Persson;David R. Benson;Philippe Normand;Brian Vanden Heuvel

  • Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034T)

    Tijana Glavina del Rio;Tijana Glavina del Rio;Birte Abt;Birte Abt;Stefan Spring;Stefan Spring;Alla Lapidus;Alla Lapidus

Frequent Co-Authors

Lynne Goodwin
Lynne Goodwin Los Alamos National Laboratory
Nikos C. Kyrpides
Nikos C. Kyrpides Joint Genome Institute
Jonathan A. Eisen
Jonathan A. Eisen University of California, Davis
Miriam Land
Miriam Land Oak Ridge National Laboratory
Natalia Ivanova
Natalia Ivanova Lawrence Berkeley National Laboratory
Cliff Han
Cliff Han Los Alamos National Laboratory
Loren Hauser
Loren Hauser Digital Infuzion (United States)
John C. Detter
John C. Detter Los Alamos National Laboratory
Philip Hugenholtz
Philip Hugenholtz University of Queensland
Tanja Woyke
Tanja Woyke Joint Genome Institute

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