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Michiel Vermeulen

Michiel Vermeulen

D-Index & Metrics

Molecular Biology

D-Index
72
Citations
21382
World Ranking
1312
National Ranking
37

Research.com Recognitions

  • 2019 - Member of Academia Europaea

Overview

Michiel Vermeulen is affiliated with Radboud University in the Netherlands. Their research spans extensive work within the fields of biochemistry, genetics, and molecular biology, contributing to over two hundred publications. Their work also encompasses medicine, with notable outputs in immunology, oncology, genetics, and cell biology as subfields of their main areas of study.

The research topics addressed by Michiel Vermeulen include:

  • Genomics and Chromatin Dynamics
  • Epigenetics and DNA Methylation
  • RNA Research and Splicing
  • RNA modifications and cancer
  • Immune responses and vaccinations
  • RNA and protein synthesis mechanisms
  • CRISPR and Genetic Engineering

They have published frequently in several scientific venues, with the highest number of publications appearing in:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Cell Reports
  • Molecular Cell
  • The EMBO Journal

Notable recent papers include:

  • "The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs," Genes & Development, 2020
  • "Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma," Nature Communications, 2020
  • "Predicting protein condensate formation using machine learning," Cell Reports, 2021
  • "Identification of Allobaculum mucolyticum as a novel human intestinal mucin degrader," Gut Microbes, 2021
  • "BANP opens chromatin and activates CpG-island-regulated genes," Nature, 2021

The scientist has collaborated frequently with peers such as Pascal W.T.C. Jansen, Marijke Baltissen, Cornelia G. Spruijt, Hannah K. Neikes, and Guido van Mierlo. These collaborations have contributed to a significant portion of their publication record.

Michiel Vermeulen has also contributed to the literature through book publications, including a work titled TET Proteins and DNA Demethylation, published by Springer Science+Business Media in 2021.

Recognition for their work includes being named a Member of Academia Europaea in 2019.

Best Publications

  • Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis

    Jesper V. Olsen;Michiel Vermeulen;Anna Santamaria;Chanchal Kumar

  • Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives

    Cornelia G. Spruijt;Felix Gnerlich;Arne H. Smits;Toni Pfaffeneder

  • Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4

    Michiel Vermeulen;Klaas W. Mulder;Sergei Denissov;W.W.M.Pim Pijnappel

  • Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers

    Michiel Vermeulen;H. Christian Eberl;Filomena Matarese;Hendrik Marks

  • Nucleosome-Interacting Proteins Regulated by DNA and Histone Methylation

    Till Bartke;Michiel Vermeulen;Blerta Xhemalce;Samuel C. Robson

  • Proteome-wide identification of ubiquitin interactions using UbIA-MS

    Xiaofei Zhang;Xiaofei Zhang;Arne H Smits;Gabrielle Ba van Tilburg;Huib Ovaa

  • N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis.

    Raghu R Edupuganti;Simon Geiger;Rik G H Lindeboom;Hailing Shi

  • Histone H2A monoubiquitination promotes histone H3 methylation in Polycomb repression.

    Reinhard Kalb;Sebastian Latwiel;H Irem Baymaz;Pascal W T C Jansen

  • Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila

    Sascha Mendjan;Mikko Taipale;Jop H Kind;Herbert Holz

  • Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation

    Antonis Kirmizis;Helena Santos-Rosa;Christopher J. Penkett;Michael A. Singer

  • SMYD3 links lysine methylation of MAP3K2 to Ras-driven cancer

    Pawel K. Mazur;Nicolas Reynoird;Purvesh Khatri;Pascal W. T. C. Jansen

  • MBD2/NuRD and MBD3/NuRD, two distinct complexes with different biochemical and functional properties.

    Xavier Le Guezennec;Michiel Vermeulen;Arie B. Brinkman;Wieteke A. M. Hoeijmakers

  • Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry.

    Michael L Nielsen;Michiel Vermeulen;Tiziana Bonaldi;Jürgen Cox

  • Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA

    Toni Pfaffeneder;Fabio Spada;Mirko Wagner;Caterina Brandmayr

  • Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics

    Arne H. Smits;Pascal W. T. C. Jansen;Ina Poser;Anthony A. Hyman

  • Regulation of the Histone H4 Monomethylase PR-Set7 by CRL4Cdt2-Mediated PCNA-Dependent Degradation during DNA Damage

    Hisanobu Oda;Michael R. Hübner;David B. Beck;Michiel Vermeulen

  • Active DNA demethylation at enhancers during the vertebrate phylotypic period

    Ozren Bogdanović;Ozren Bogdanović;Ozren Bogdanović;Arne H Smits;Elisa de la Calle Mustienes;Juan J Tena

  • MicroRNA Regulation of Cbx7 Mediates a Switch of Polycomb Orthologs during ESC Differentiation

    Ana O'Loghlen;Ana M. Muñoz-Cabello;Alexandre Gaspar-Maia;Hsan Au Wu

  • Quantitative Dissection and Stoichiometry Determination of the Human SET1/MLL Histone Methyltransferase Complexes

    Rick van Nuland;Arne H. Smits;Paschalina Pallaki;Pascal W. T. C. Jansen

  • A map of general and specialized chromatin readers in mouse tissues generated by label-free interaction proteomics

    H. Christian Eberl;Cornelia G. Spruijt;Christian D. Kelstrup;Michiel Vermeulen

Frequent Co-Authors

Hendrik G. Stunnenberg
Hendrik G. Stunnenberg Radboud University
Matthias Mann
Matthias Mann Max Planck Institute of Biochemistry
Kevin M. Brown
Kevin M. Brown National Institutes of Health
Joost H.A. Martens
Joost H.A. Martens Radboud University
Brian Hendrich
Brian Hendrich University of Cambridge
Ina Poser
Ina Poser Max Planck Society
Mark M. Iles
Mark M. Iles University of Leeds
Jesper V. Olsen
Jesper V. Olsen University of Copenhagen
Raphael Margueron
Raphael Margueron PSL University
Ronald P. van Rij
Ronald P. van Rij Radboud University

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