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D-Index & Metrics

Genetics

D-Index
68
Citations
38738
World Ranking
2385
National Ranking
79

Overview

Ryan Lister is affiliated with the University of Western Australia in Australia. Their research concentrates broadly on Biochemistry, Genetics and Molecular Biology, with 123 publications in this field, encompassing significant work in Molecular Biology, Plant Science, Genetics, Cancer Research, and Pediatrics, Perinatology and Child Health.

The scientist's main research topics include:

  • CRISPR and Genetic Engineering
  • Epigenetics and DNA Methylation
  • Single-cell and spatial transcriptomics
  • Plant Molecular Biology Research
  • Pluripotent Stem Cells Research
  • Plant tissue culture and regeneration
  • Genomics and Chromatin Dynamics

Ryan Lister has considerable publication activity in several venues, with the most frequent being:

  • bioRxiv (Cold Spring Harbor Laboratory) with 19 publications
  • Nature Communications with 5 publications
  • Nature Plants with 4 publications
  • Zenodo (CERN European Organization for Nuclear Research) with 4 publications
  • Nature with 3 publications

Some recent papers illustrating the breadth and impact of their work are:

  • Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows, 2020, Genome Biology
  • Transcriptional signature in microglia associated with Aβ plaque phagocytosis, 2021, Nature Communications
  • Modelling human blastocysts by reprogramming fibroblasts into iBlastoids, 2021, Nature
  • Reprogramming roadmap reveals route to human induced trophoblast stem cells, 2020, Nature
  • Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution, 2022, Cell

Their collaborative work is reflected in frequent coauthorship with researchers including:

  • Jahnvi Pflueger
  • Daniel Poppe
  • James P. B. Lloyd
  • Marina Oliva
  • Sam Buckberry

Ryan Lister's research engages multiple complex areas of molecular biology and genetics, employing advanced techniques such as single-cell transcriptomics and CRISPR. Their work also extends into areas involving pluripotent stem cells and plant molecular biology, highlighting a multidisciplinary approach within the molecular life sciences.

Best Publications

  • Integrative analysis of 111 reference human epigenomes

    Anshul Kundaje;Wouter Meuleman;Wouter Meuleman;Jason Ernst

  • Human DNA methylomes at base resolution show widespread epigenomic differences

    Ryan Lister;Mattia Pelizzola;Robert H. Dowen;R. David Hawkins

  • Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

    Ryan Lister;Ronan C. O'Malley;Julian Tonti-Filippini;Brian D. Gregory

  • Global Epigenomic Reconfiguration During Mammalian Brain Development

    Ryan Lister;Ryan Lister;Eran A. Mukamel;Joseph R. Nery;Mark Urich

  • Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

    Ryan Lister;Mattia Pelizzola;Yasuyuki S. Kida;R. David Hawkins

  • Widespread dynamic DNA methylation in response to biotic stress

    Robert H. Dowen;Mattia Pelizzola;Robert J. Schmitz;Ryan Lister

  • Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

    William A. Pastor;Utz J. Pape;Utz J. Pape;Yun Huang;Hope R. Henderson;Hope R. Henderson

  • Distinct epigenomic landscapes of pluripotent and lineage-committed human cells

    R. David Hawkins;Gary C. Hon;Leonard K. Lee;QueMinh Ngo

  • Genome evolution in the allotetraploid frog Xenopus laevis

    Adam M. Session;Adam M. Session;Yoshinobu Uno;Taejoon Kwon;Taejoon Kwon;Jarrod A. Chapman

  • Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells

    Wei Xie;Matthew D. Schultz;Ryan Lister;Zhonggang Hou

  • Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

    R Alan Harris;Ting Wang;Cristian Coarfa;Raman P. Nagarajan

  • A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation.

    Alexandra Grubman;Alexandra Grubman;Alexandra Grubman;Gabriel Chew;John F Ouyang;Guizhi Sun;Guizhi Sun;Guizhi Sun

  • Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

    Alisa Mo;Eran A. Mukamel;Eran A. Mukamel;Fred P. Davis;Chongyuan Luo

  • Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

    Gary C. Hon;R. David Hawkins;Otavia L. Caballero;Christine Lo

  • Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

    Elena Denisenko;Belinda B. Guo;Matthew Jones;Rui Hou

  • A link between RNA metabolism and silencing affecting Arabidopsis development.

    Brian D. Gregory;Ronan C. O'Malley;Ryan Lister;Mark A. Urich

  • Finding the fifth base: Genome-wide sequencing of cytosine methylation

    Ryan Lister;Joseph R. Ecker

  • Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana

    Rachel Clifton;Ryan Lister;Karen L. Parker;Pia G. Sappl

  • Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond.

    Ryan Lister;Brian D Gregory;Joseph R Ecker

  • Epigenomic Analysis of Multi-lineage Differentiation of Human Embryonic Stem Cells

    Benjamin Garcia;Wei Xie;Matt Schultz;Ryan Lister

Frequent Co-Authors

Jose M. Polo
Jose M. Polo Monash University
Joseph R. Ecker
Joseph R. Ecker Salk Institute for Biological Studies
James Whelan
James Whelan La Trobe University
Bing Ren
Bing Ren New York Genome Center
A. Harvey Millar
A. Harvey Millar University of Western Australia
Joseph R. Nery
Joseph R. Nery Salk Institute for Biological Studies
James A. Thomson
James A. Thomson University of California, Santa Barbara
Ron Stewart
Ron Stewart Morgridge Institute for Research
Justin O. Borevitz
Justin O. Borevitz Australian National University
Susan K. Nilsson
Susan K. Nilsson Commonwealth Scientific and Industrial Research Organisation

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