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Genetics

D-Index
57
Citations
28424
World Ranking
3355
National Ranking
1454

Overview

Joseph R. Nery is affiliated with the Salk Institute for Biological Studies in the United States. Their research spans multiple fields, with a particular focus on Biochemistry, Genetics and Molecular Biology, and Agricultural and Biological Sciences.

The scientist's work is concentrated in several subfields, notably Molecular Biology, Plant Science, Neurology, Genetics, and Developmental Neuroscience. Their main research topics include Single-cell and spatial transcriptomics, Epigenetics and DNA Methylation, Plant Molecular Biology Research, Genomics and Chromatin Dynamics, Neuroinflammation and Neurodegeneration Mechanisms, RNA Research and Splicing, and Genetics and Neurodevelopmental Disorders.

Joseph R. Nery has contributed to multiple recent peer-reviewed publications, including:

  • Comparative cellular analysis of motor cortex in human, marmoset and mouse, 2021, Nature
  • A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex, 2021, Nature
  • DNA methylation atlas of the mouse brain at single-cell resolution, 2021, Nature
  • Integrated multi-omics framework of the plant response to jasmonic acid, 2020, Nature Plants
  • Spatiotemporal DNA methylome dynamics of the developing mouse fetus, 2020, Nature

Frequent co-authors in Joseph R. Nery's research include Joseph R. Ecker, Rosa Castanon, Anna Bartlett, Hanqing Liu, and M. Margarita Behrens. The scientist has published extensively in venues such as bioRxiv (Cold Spring Harbor Laboratory), Nature, eLife, Nature Plants, and Cell Genomics.

Publication counts indicate a strong presence in preprint and high-impact journals, reflecting a focus on molecular and cellular research domains across neuroscience and plant science.

Best Publications

  • Human DNA methylomes at base resolution show widespread epigenomic differences

    Ryan Lister;Mattia Pelizzola;Robert H. Dowen;R. David Hawkins

  • Global Epigenomic Reconfiguration During Mammalian Brain Development

    Ryan Lister;Ryan Lister;Eran A. Mukamel;Joseph R. Nery;Mark Urich

  • Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

    Ryan Lister;Mattia Pelizzola;Yasuyuki S. Kida;R. David Hawkins

  • Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

    Ronan C. O'Malley;Shao Shan Carol Huang;Liang Song;Mathew G. Lewsey

  • Widespread dynamic DNA methylation in response to biotic stress

    Robert H. Dowen;Mattia Pelizzola;Robert J. Schmitz;Ryan Lister

  • Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

    Taiji Kawakatsu;Shao-shan Carol Huang;Florian Jupe;Eriko Sasaki

  • Comparative cellular analysis of motor cortex in human, marmoset and mouse

    Trygve E. Bakken;Nikolas L. Jorstad;Qiwen Hu;Blue B. Lake

  • Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

    Alisa Mo;Eran A. Mukamel;Eran A. Mukamel;Fred P. Davis;Chongyuan Luo

  • Human body epigenome maps reveal noncanonical DNA methylation variation

    Matthew D. Schultz;Yupeng He;John W. Whitaker;Manoj Hariharan

  • Patterns of population epigenomic diversity

    Robert J. Schmitz;Matthew D. Schultz;Matthew D. Schultz;Mark A. Urich;Joseph R. Nery

  • Comparison of the transcriptional landscapes between human and mouse tissues

    Shin Lin;Yiing Lin;Joseph R. Nery;Mark A. Urich

  • Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex

    Chongyuan Luo;Christopher L. Keown;Laurie Kurihara;Jingtian Zhou;Jingtian Zhou

  • Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light

    Ullas V. Pedmale;Shao Shan Carol Huang;Mark Zander;Benjamin J. Cole;Benjamin J. Cole

  • A transcription factor hierarchy defines an environmental stress response network

    Liang Song;Shao-shan Carol Huang;Aaron Wise;Rosa Castanon

  • Molecular Criteria for Defining the Naive Human Pluripotent State

    Thorold W. Theunissen;Marc Friedli;Yupeng He;Yupeng He;Evarist Planet

  • Mapping genome-wide transcription-factor binding sites using DAP-seq.

    Anna Bartlett;Ronan C. O'Malley;Ronan C. O'Malley;Shao Shan Carol Huang;Mary Galli;Mary Galli

  • Integration of omic networks in a developmental atlas of maize.

    Justin W. Walley;Justin W. Walley;Ryan C. Sartor;Zhouxin Shen;Robert J. Schmitz

  • Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

    Katherine Noelani Chang;Shan Zhong;Matthew T. Weirauch;Gary Hon

  • Abnormalities in human pluripotent cells due to reprogramming mechanisms

    Hong Ma;Robert Morey;Ryan C. O'Neil;Ryan C. O'Neil;Yupeng He;Yupeng He

  • Epigenomic Analysis of Multi-lineage Differentiation of Human Embryonic Stem Cells

    Benjamin Garcia;Wei Xie;Matt Schultz;Ryan Lister

Frequent Co-Authors

Joseph R. Ecker
Joseph R. Ecker Salk Institute for Biological Studies
Bing Ren
Bing Ren New York Genome Center
M. Margarita Behrens
M. Margarita Behrens Salk Institute for Biological Studies
Ryan Lister
Ryan Lister University of Western Australia
Robert J. Schmitz
Robert J. Schmitz University of Georgia
Terrence J. Sejnowski
Terrence J. Sejnowski Salk Institute for Biological Studies
Aviv Regev
Aviv Regev Genentech
Ziv Bar-Joseph
Ziv Bar-Joseph Carnegie Mellon University
Axel Visel
Axel Visel Lawrence Berkeley National Laboratory
Steven A. McCarroll
Steven A. McCarroll Harvard University

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