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D-Index & Metrics

Molecular Biology

D-Index
90
Citations
38898
World Ranking
730
National Ranking
393

Research.com Recognitions

  • 2017 - Fellow of the American Academy of Arts and Sciences
  • 1993 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

James T. Kadonaga is affiliated with the University of California, San Diego in the United States. Their research spans multiple areas within biochemistry, genetics, and molecular biology, with a primary focus on molecular biology as evidenced by their 23 publications in the subfield.

The main topics in their work include:

  • Genomics and Chromatin Dynamics
  • RNA Research and Splicing
  • RNA and protein synthesis mechanisms
  • CRISPR and Genetic Engineering
  • NF-κB Signaling Pathways
  • RNA regulation and disease
  • Bone Metabolism and Diseases

Their recent papers cover various aspects of molecular and cellular biology. Notable publications include:

  • Identification of the human DPR core promoter element using machine learning (2020, Nature)
  • Enhancement of homology-directed repair with chromatin donor templates in cells (2020, eLife)
  • RANK ligand converts the NCoR/HDAC3 co-repressor to a PGC1β- and RNA-dependent co-activator of osteoclast gene expression (2023, Molecular Cell)
  • A TLR4/TRAF6-dependent signaling pathway mediates NCoR coactivator complex formation for inflammatory gene activation (2024, Proceedings of the National Academy of Sciences)
  • Reconstitution of Chromatin by Stepwise Salt Dialysis (2021, BIO-PROTOCOL)

Kadonaga frequently collaborates with several researchers across their publications. The most frequent co-authors include:

  • Grisel Cruz-Becerra (6 publications)
  • Long Vo Ngoc (3 publications)
  • Eric Kofman (2 publications)
  • Zhengyu Ouyang (2 publications)
  • Nathanael J. Spann (2 publications)

Their work is published predominantly in esteemed venues such as Genes & Development, where they have 4 publications, as well as bioRxiv (Cold Spring Harbor Laboratory), Nature, eLife, and Molecular Cell.

Kadonaga has been recognized by professional organizations, having been named a Fellow of the American Association for the Advancement of Science (AAAS) in 1993 and a Fellow of the American Academy of Arts and Sciences in 2017.

Best Publications

  • Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain.

    James T. Kadonaga;Kristin R. Carner;Frank R. Masiarz;Robert Tjian

  • Purification and biochemical characterization of the promoter-specific transcription factor, Sp1

    Michael R. Briggs;James T. Kadonaga;Stephen P. Bell;Robert Tjian

  • The RNA polymerase II core promoter.

    Stephen T. Smale;James T. Kadonaga

  • Affinity purification of sequence-specific DNA binding proteins.

    James T. Kadonaga;Robert Tjian

  • Promoter-specific activation of RNA polymerase II transcription by Sp1

    James T. Kadonaga;Katherine A. Jones;Robert Tjian

  • Going the distance: a current view of enhancer action.

    Elizabeth M. Blackwood;James T. Kadonaga

  • A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication

    Katherine A. Jones;James T. Kadonaga;Philip J. Rosenfeld;Thomas J. Kelly

  • What's Up and Down with Histone Deacetylation and Transcription?

    Michael J Pazin;James T Kadonaga

  • Strategies for Protein Purification and Characterization A Laboratory Course Manual

    D. R. Marshak;J. T. Kadonaga;R. R. Burgess;M. W. Knuth

  • Tools for neuroanatomy and neurogenetics in Drosophila

    Barret D. Pfeiffer;Arnim Jenett;Ann S. Hammonds;Teri T.B. Ngo

  • The RNA polymerase II core promoter: a key component in the regulation of gene expression.

    Jennifer E.F. Butler;James T. Kadonaga

  • Activation of the AIDS retrovirus promoter by the cellular transcription factor, Sp1

    Katherine A. Jones;James T. Kadonaga;Paul A. Luciw;Robert Tjian

  • ACF, an ISWI-Containing and ATP-Utilizing Chromatin Assembly and Remodeling Factor

    Takashi Ito;Michael Bulger;Michael J Pazin;Ryuji Kobayashi

  • Eukaryotic Transcription: An Interlaced Network of Transcription Factors and Chromatin-Modifying Machines

    James T Kadonaga

  • The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila.

    Thomas W. Burke;James T. Kadonaga

  • The RCAF complex mediates chromatin assembly during DNA replication and repair

    Jessica K. Tyler;Christopher R. Adams;Shaw Ree Chen;Shaw Ree Chen;Ryuji Kobayashi

  • Regulation of gene expression via the core promoter and the basal transcriptional machinery.

    Tamar Juven-Gershon;James T. Kadonaga

  • Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters.

    T W Burke;J T Kadonaga

  • Regulation of RNA Polymerase II Transcription by Sequence-Specific DNA Binding Factors

    James T Kadonaga

  • The Downstream Promoter Element DPE Appears To Be as Widely Used as the TATA Box in Drosophila Core Promoters

    Alan K. Kutach;James T. Kadonaga

Frequent Co-Authors

George A. Kassavetis
George A. Kassavetis University of California, San Diego
Robert Tjian
Robert Tjian University of California, Berkeley
Ryuji Kobayashi
Ryuji Kobayashi The University of Texas MD Anderson Cancer Center
Jessica K. Tyler
Jessica K. Tyler Cornell University
Uwe Ohler
Uwe Ohler Max Delbrück Center for Molecular Medicine
Katherine A. Jones
Katherine A. Jones Salk Institute for Biological Studies
Bing Ren
Bing Ren New York Genome Center
Jeremy R. Knowles
Jeremy R. Knowles Harvard University
Eva Nogales
Eva Nogales University of California, Berkeley
Christopher K. Glass
Christopher K. Glass University of California, San Diego

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