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Engineering and Technology
Switzerland
2022

D-Index & Metrics

Engineering and Technology

D-Index
65
Citations
61305
World Ranking
1476
National Ranking
27

Research.com Recognitions

  • 2022 - Research.com Engineering and Technology in Switzerland Leader Award

Overview

Torsten Schwede is affiliated with the University of Basel in Switzerland and has contributed to the field of Biochemistry, Genetics, and Molecular Biology, with a particular focus on Molecular Biology. Their research spans several subfields, including Materials Chemistry, Computational Theory and Mathematics, Infectious Diseases, and Oncology.

The main topics addressed in Schwede's work include:

  • Protein Structure and Dynamics
  • Enzyme Structure and Function
  • RNA and protein synthesis mechanisms
  • Computational Drug Discovery Methods
  • Microbial Metabolic Engineering and Bioproduction
  • Machine Learning in Bioinformatics
  • Genomics and Phylogenetic Studies

Schwede has published extensively in several scientific venues. Key frequent publication sources include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Proteins Structure Function and Bioinformatics
  • Zenodo (CERN European Organization for Nuclear Research)
  • Bioinformatics
  • Journal of Molecular Biology

Among the notable recent papers by Schwede are:

  • Critical assessment of methods of protein structure prediction (CASP)-Round XIV, 2021, Proteins Structure Function and Bioinformatics
  • ProMod3-A versatile homology modelling toolbox, 2021, PLoS Computational Biology
  • QMEANDisCo-distance constraints applied on model quality estimation, 2020, Bioinformatics
  • Uncovering new families and folds in the natural protein universe, 2023, Nature
  • Critical assessment of methods of protein structure prediction ( CASP )-Round XV, 2023, Proteins Structure Function and Bioinformatics

Frequent co-authors in Schwede's work include:

  • Gerardo Tauriello
  • Janani Durairaj
  • Gabriel Studer
  • Joana Pereira
  • Andrew Waterhouse

Best Publications

  • SWISS-MODEL: homology modelling of protein structures and complexes.

    Andrew Waterhouse;Andrew Waterhouse;Martino Bertoni;Martino Bertoni;Stefan Bienert;Stefan Bienert;Gabriel Studer;Gabriel Studer

  • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

    Konstantin Arnold;Lorenza Bordoli;Jürgen Kopp;Torsten Schwede

  • SWISS-MODEL: an automated protein homology-modeling server

    Torsten Schwede;Jürgen Kopp;Nicolas Guex;Manuel C. Peitsch

  • SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

    Marco Biasini;Stefan Bienert;Andrew Waterhouse;Konstantin Arnold

  • Toward the estimation of the absolute quality of individual protein structure models

    Pascal Benkert;Marco Biasini;Torsten Schwede

  • The SWISS-MODEL Repository and associated resources

    Florian Kiefer;Konstantin Arnold;Michael Künzli;Lorenza Bordoli

  • Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: a historical perspective.

    Nicolas Guex;Manuel C. Peitsch;Torsten Schwede;Torsten Schwede

  • The SWISS-MODEL Repository—new features and functionality

    Unknown

  • Protein structure homology modeling using SWISS-MODEL workspace

    Lorenza Bordoli;Florian Kiefer;Florian Kiefer;Konstantin Arnold;Konstantin Arnold;Pascal Benkert;Pascal Benkert

  • lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

    Valerio Mariani;Marco Biasini;Alessandro Barbato;Torsten Schwede

  • The SWISS-MODEL Repository: new features and functionalities.

    Jürgen Kopp;Torsten Schwede

  • QMEAN server for protein model quality estimation

    Pascal Benkert;Michael Künzli;Torsten Schwede

  • QMEANDisCo-distance constraints applied on model quality estimation.

    Gabriel Studer;Gabriel Studer;Christine Rempfer;Christine Rempfer;Andrew M Waterhouse;Andrew M Waterhouse;Rafal Gumienny;Rafal Gumienny

  • Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology

    Martino Bertoni;Martino Bertoni;Florian Kiefer;Florian Kiefer;Marco Biasini;Marco Biasini;Lorenza Bordoli;Lorenza Bordoli

  • Critical assessment of methods of protein structure prediction (CASP)-Round XIII

    Andriy Kryshtafovych;Torsten Schwede;Maya Topf;Krzysztof Fidelis

  • Critical assessment of methods of protein structure prediction (CASP)-Round XIV.

    Andriy Kryshtafovych;Torsten Schwede;Maya Topf;Krzysztof Fidelis

  • The SWISS‐MODEL Repository of annotated three‐dimensional protein structure homology models

    Jürgen Kopp;Torsten Schwede

  • Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression

    Anna Duerig;Sören Abel;Marc Folcher;Micael Nicollier

  • The Protein Model Portal--a comprehensive resource for protein structure and model information.

    Juergen Haas;Steven Roth;Konstantin Arnold;Florian Kiefer

  • Critical assessment of methods of protein structure prediction: Progress and new directions in round XI

    John Moult;Krzysztof Fidelis;Andriy Kryshtafovych;Torsten Schwede

  • 2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.

    Jill Trewhella;Anthony P. Duff;Dominique Durand;Frank Gabel

Frequent Co-Authors

Helen M. Berman
Helen M. Berman Rutgers, The State University of New Jersey
John D. Westbrook
John D. Westbrook Rutgers, The State University of New Jersey
Andriy Kryshtafovych
Andriy Kryshtafovych University of California, Davis
Paul D. Adams
Paul D. Adams Lawrence Berkeley National Laboratory
Manuel C. Peitsch
Manuel C. Peitsch Philip Morris International (United States)
John Moult
John Moult University of Maryland, College Park
Wladek Minor
Wladek Minor University of Virginia
Stephen K. Burley
Stephen K. Burley Rutgers, The State University of New Jersey
Andrej Sali
Andrej Sali University of California, San Francisco
Andrzej Joachimiak
Andrzej Joachimiak Argonne National Laboratory

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