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Molecular Biology

D-Index
71
Citations
45587
World Ranking
1339
National Ranking
680

Overview

Roland L. Dunbrack is affiliated with the Fox Chase Cancer Center in the United States. Their research primarily spans the field of Biochemistry, Genetics and Molecular Biology, with a focus on Molecular Biology, Materials Chemistry, Oncology, Immunology, and Genetics as notable subfields.

The scholar's work covers multiple key topics, including:

  • Protein Structure and Dynamics
  • Enzyme Structure and Function
  • RNA and protein synthesis mechanisms
  • Ubiquitin and proteasome pathways
  • Monoclonal and Polyclonal Antibodies Research
  • Protein Kinase Regulation and GTPase Signaling
  • Bioinformatics and Genomic Networks

Recent publications reflect a focus on structural biology and computational modeling. Notable papers include:

  • "Macromolecular modeling and design in Rosetta: recent methods and frameworks," 2020, Nature Methods
  • "Kincore: a web resource for structural classification of protein kinases and their inhibitors," 2021, Nucleic Acids Research
  • "PDBe-KB: collaboratively defining the biological context of structural data," 2021, Nucleic Acids Research
  • "ProtCID: a data resource for structural information on protein interactions," 2020, Nature Communications
  • "CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods," 2024, Genome Biology

The scientist frequently collaborates with other researchers in their field, including:

  • Bulat Faezov
  • Jared Adolf-Bryfogle
  • Jeffrey J. Gray
  • Brian Kuhlman
  • Jason W. Labonte

Publication venues with frequent contributions include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • OPAL (Open@LaTrobe) (La Trobe University)
  • Zenodo (CERN European Organization for Nuclear Research)
  • Nucleic Acids Research
  • Nature Communications

The research output of Roland L. Dunbrack is extensively connected to protein science, structural classification, and computational biology, making contributions that span experimental and data-driven approaches within molecular life sciences.

Best Publications

  • All-atom empirical potential for molecular modeling and dynamics studies of proteins.

    A. D. MacKerell;D. Bashford;M. Bellott;R. L. Dunbrack

  • PISCES: a protein sequence culling server

    Guoli Wang;Roland L. Dunbrack

  • Improved prediction of protein side-chain conformations with SCWRL4.

    Georgii G. Krivov;Maxim V. Shapovalov;Roland L. Dunbrack

  • A graph-theory algorithm for rapid protein side-chain prediction

    Adrian A. Canutescu;Andrew A. Shelenkov;Roland L. Dunbrack

  • The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.

    Rebecca F. Alford;Andrew Leaver-Fay;Jeliazko R. Jeliazkov;Matthew J. O’Meara

  • PONDR-FIT: a meta-predictor of intrinsically disordered amino acids.

    Bin Xue;Roland L. Dunbrack;Robert W. Williams;A. Keith Dunker

  • Backbone-dependent Rotamer Library for Proteins Application to Side-chain Prediction

    Roland L. Dunbrack;Martin Karplus

  • Bayesian statistical analysis of protein side-chain rotamer preferences

    Roland L. Dunbrack;Fred E. Cohen

  • A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions

    Maxim V. Shapovalov;Roland L. Dunbrack

  • Macromolecular modeling and design in Rosetta: recent methods and frameworks

    Julia Koehler Leman;Brian D. Weitzner;Brian D. Weitzner;Steven M. Lewis;Steven M. Lewis;Jared Adolf-Bryfogle

  • Rotamer libraries in the 21st century.

    Roland L Dunbrack

  • Formation of MacroH2A-Containing Senescence-Associated Heterochromatin Foci and Senescence Driven by ASF1a and HIRA

    Rugang Zhang;Maxim V. Poustovoitov;Maxim V. Poustovoitov;Xiaofen Ye;Hidelita A. Santos

  • PREDICTION OF PROTEIN SIDE-CHAIN ROTAMERS FROM A BACKBONE-DEPENDENT ROTAMER LIBRARY : A NEW HOMOLOGY MODELING TOOL

    Michael J. Bower;Fred E. Cohen;Roland L. Dunbrack

  • Cyclic coordinate descent: A robotics algorithm for protein loop closure.

    Adrian A. Canutescu;Roland L. Dunbrack

  • Aurora A kinase (AURKA) in normal and pathological cell division.

    Anna S. Nikonova;Igor Astsaturov;Ilya G. Serebriiskii;Roland L. Dunbrack

  • Defects in DNA Repair Genes Predict Response to Neoadjuvant Cisplatin-based Chemotherapy in Muscle-invasive Bladder Cancer

    Elizabeth R. Plimack;Roland L. Dunbrack;Timothy A. Brennan;Mark D. Andrake

  • Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains.

    Roland L. Dunbrack;Martin Karplus

  • A new clustering of antibody CDR loop conformations

    Benjamin North;Andreas Lehmann;Roland L. Dunbrack

  • PISCES: recent improvements to a PDB sequence culling server.

    Guoli Wang;Roland L. Dunbrack

  • Large-scale comparison of protein sequence alignment algorithms with structure alignments.

    J. Michael Sauder;Jonathan W. Arthur;Roland L. Dunbrack

Frequent Co-Authors

William R. Schief
William R. Schief Scripps Research Institute
Jeffrey J. Gray
Jeffrey J. Gray Johns Hopkins University
Brian Kuhlman
Brian Kuhlman University of North Carolina at Chapel Hill
Erica A. Golemis
Erica A. Golemis Fox Chase Cancer Center
Tanja Kortemme
Tanja Kortemme University of California, San Francisco
David Baker
David Baker University of Washington
Richard Bonneau
Richard Bonneau New York University
Jens Meiler
Jens Meiler Vanderbilt University
Rhiju Das
Rhiju Das Stanford University
David T. Jones
David T. Jones University College London

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