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Microbiology
France
2026

D-Index & Metrics

Microbiology

D-Index
113
Citations
96291
World Ranking
212
National Ranking
10

Research.com Recognitions

  • 2026 - Research.com Microbiology in France Leader Award
  • 2025 - Research.com Microbiology in France Leader Award

Overview

Joël Doré is affiliated with INRAE, the Institut national de recherche pour l'agriculture, l'alimentation et l'environnement in France. Their research spans multiple fields within the life sciences, focusing particularly on medicine and biochemistry, genetics, and molecular biology.

Their work contributes to advancing the understanding of the gut microbiota and its impact on health. Key research topics in Doré's portfolio include:

  • Gut microbiota and health
  • Clostridium difficile and Clostridium perfringens research
  • Diet and metabolism studies
  • Gastrointestinal motility and disorders
  • Neutropenia and cancer infections
  • Nutritional studies and diet
  • Eating disorders and behaviors

Doré's publications are frequently found in specialized venues, with multiple contributions to journals such as:

  • Gut Microbes
  • Microbiome
  • Clinical Nutrition ESPEN
  • Frontiers in Microbiology
  • Gastroenterology

The subfields of study most associated with Doré include molecular biology, physiology, and infectious diseases, followed by oncology and public health domains. Their research output reflects a multidisciplinary approach integrating these areas.

Recent notable papers by Doré cover a range of topics in microbiome research and health, published between 2020 and 2024. These include:

  • "Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies," 2023, Nature
  • "Introduction to host microbiome symbiosis in health and disease," 2020, Mucosal Immunology
  • "Gut Microbiota Resilience: Definition, Link to Health and Strategies for Intervention," 2020, Frontiers in Microbiology
  • "Alterations in Gut Microbiome in Cirrhosis as Assessed by Quantitative Metagenomics: Relationship With Acute-on-Chronic Liver Failure and Prognosis," 2020, Gastroenterology
  • "Examining the healthy human microbiome concept," 2024, Nature Reviews Microbiology

Doré has collaborated extensively with several researchers who appear frequently as co-authors. These include Hervé M. Blottière, Nicolas Pons, Stanislas Mondot, Nicolas Lapaque, and Mohamad Mohty. Their collaboration network indicates strong ties within the microbiome research community.

Best Publications

  • A human gut microbial gene catalogue established by metagenomic sequencing

    Junjie Qin;Ruiqiang Li;Jeroen Raes;Manimozhiyan Arumugam

  • Enterotypes of the human gut microbiome

    Manimozhiyan Arumugam;Jeroen Raes;Eric Pelletier;Denis Le Paslier

  • Richness of human gut microbiome correlates with metabolic markers

    Trine Nielsen;Junjie Qin;Edi Prifti

  • Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

    Harry Sokol;Bénédicte Pigneur;Laurie Watterlot;Omar Lakhdari

  • Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach

    Chaysavanh Manichanh;Lionel Rigottier-Gois;Elian Bonnaud;Karine Gloux

  • An integrated catalog of reference genes in the human gut microbiome

    Junhua Li;Huijue Jia;Xianghang Cai;Huanzi Zhong

  • Enterotypes of the human gut mycobiome

    Unknown

  • Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

    Kristoffer Forslund;Falk Hildebrand;Falk Hildebrand;Trine Nielsen;Gwen Falony;Gwen Falony

  • The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide

    Sophie Viaud;Sophie Viaud;Fabiana Saccheri;Grégoire Mignot;Takahiro Yamazaki

  • Direct Analysis of Genes Encoding 16S rRNA from Complex Communities Reveals Many Novel Molecular Species within the Human Gut

    Antonia Suau;Antonia Suau;Régis Bonnet;Malène Sutren;Jean Jacques Godon

  • Human gut microbes impact host serum metabolome and insulin sensitivity

    Helle Krogh Pedersen;Valborg Gudmundsdottir;Henrik B. Nielsen;Tuulia Hyötyläinen;Tuulia Hyötyläinen

  • Dietary intervention impact on gut microbial gene richness

    Aurélie Cotillard;Aurélie Cotillard;Sean P. Kennedy;Ling Chun Kong;Ling Chun Kong;Edi Prifti;Edi Prifti;Edi Prifti

  • The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age.

    Denis Mariat;Olivier Firmesse;Florence Levenez;Vd Guimarăes

  • Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology

    Maria Carlota Dao;Amandine Everard;Judith Aron-Wisnewsky;Nataliya Sokolovska

  • Low counts of Faecalibacterium prausnitzii in colitis microbiota.

    Sokol H;Seksik P;Furet Jp;Firmesse O

  • Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers.

    Jean-Pierre Furet;Ling-Chun Kong;Julien Tap;Christine Poitou

  • Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

    H Bjørn Nielsen;Mathieu Almeida;Agnieszka Sierakowska Juncker;Simon Rasmussen

  • Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study.

    Susanne Mueller;Katiana Saunier;Christiana Hanisch;Elisabeth Norin

  • Towards the human intestinal microbiota phylogenetic core

    Julien Tap;Stanislas Mondot;Florence Levenez;Eric Pelletier

  • Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon

    P Seksik;L Rigottier-Gois;G Gramet;M Sutren

  • Bacterial imprinting of the neonatal immune system: lessons from maternal cells?

    Pablo F Perez;Joël Doré;Marion Leclerc;Florence Levenez

Frequent Co-Authors

Hervé M. Blottière
Hervé M. Blottière University of Paris-Saclay
Patricia Lepage
Patricia Lepage University of Paris-Saclay
S. Dusko Ehrlich
S. Dusko Ehrlich University College London
Nicolas Pons
Nicolas Pons University of Paris-Saclay
Gérard Corthier
Gérard Corthier INRAE : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement
Francisco Guarner
Francisco Guarner Autonomous University of Barcelona
Willem M. de Vos
Willem M. de Vos Wageningen University & Research
Torben Hansen
Torben Hansen University of Copenhagen
Michael Blaut
Michael Blaut University of Potsdam
Søren Brunak
Søren Brunak University of Copenhagen

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