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Shintaro Katayama

Shintaro Katayama

D-Index & Metrics

Molecular Biology

D-Index
45
Citations
19442
World Ranking
2828
National Ranking
37

Overview

Shintaro Katayama is affiliated with the Karolinska Institute in Sweden and has contributed extensively to the fields of Biochemistry, Genetics, and Molecular Biology, with a total of 83 publications. Their work also spans Medicine, where they have contributed to 49 publications.

Their research focuses on several subfields, including Molecular Biology, Genetics, Public Health, Environmental and Occupational Health, Immunology, and Economics and Econometrics.

Key topics addressed in their publications include:

  • CRISPR and Genetic Engineering
  • Reproductive Biology and Fertility
  • Single-cell and Spatial Transcriptomics
  • Pluripotent Stem Cells Research
  • Genomics and Chromatin Dynamics
  • Epigenetics and DNA Methylation
  • Reproductive System and Pregnancy

Katayama has published frequently in venues such as bioRxiv (Cold Spring Harbor Laboratory) with 8 papers, Japanese Journal of JSCE with 4, and Zenodo (CERN European Organization for Nuclear Research) also with 4. They have multiple publications in Nature Communications and iScience, with 3 papers each.

Their recent papers illustrate a range of topics and collaborations, including:

  • "Single-cell analysis of human ovarian cortex identifies distinct cell populations but no oogonial stem cells," 2020, Nature Communications
  • "Dog colour patterns explained by modular promoters of ancient canid origin," 2021, Nature Ecology & Evolution
  • "DUX4 is a multifunctional factor priming human embryonic genome activation," 2022, iScience
  • "Epigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients," 2020, Scientific Reports
  • "Fetal HLA-G mediated immune tolerance and interferon response in preeclampsia," 2020, EBioMedicine

Frequent co-authors in Katayama's research include Juha Kere, Masahito Yoshihara, Kaarel Krjutškov, Sini Ezer, and Yazgeldi Gamze. These collaborations occur across a variety of topics and publications, reflecting a network of ongoing scientific partnerships.

Best Publications

  • The Transcriptional Landscape of the Mammalian Genome

    P. Carninci;T. Kasukawa;S. Katayama;J. Gough

  • A promoter-level mammalian expression atlas

    Alistair R.R. Forrest;Hideya Kawaji;Michael Rehli;J. Kenneth Baillie

  • Antisense Transcription in the Mammalian Transcriptome

    S. Katayama;Y. Tomaru;T. Kasukawa;K. Waki

  • Genome-wide analysis of mammalian promoter architecture and evolution

    Piero Carninci;Albin Sandelin;Boris Lenhard;Boris Lenhard;Shintaro Katayama

  • Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.

    Toshiyuki Shiraki;Shinji Kondo;Shintaro Katayama;Kazunori Waki

  • An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

    Timothy Ravasi;Harukazu Suzuki;Carlo Vittorio Cannistraci;Shintaro Katayama

  • Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

    Timothy Ravasi;Harukazu Suzuki;Ken C. Pang;Shintaro Katayama

  • The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

    Harukazu Suzuki;Alistair R.R. Forrest;Erik Van Nimwegen;Carsten O. Daub

  • Correction: Corrigendum: Characterization and target genes of nine human PRD-like homeobox domain genes expressed exclusively in early embryos

    Elo Madissoon;Eeva-Mari Jouhilahti;Liselotte Vesterlund;Virpi Töhönen

  • Microbe-host interplay in atopic dermatitis and psoriasis

    Nanna Fyhrquist;Nanna Fyhrquist;Gareth Muirhead;Stefanie Prast-Nielsen;Marine Jeanmougin

  • Hidden layers of human small RNAs.

    Hideya Kawaji;Mari Nakamura;Yukari Takahashi;Albin Sandelin

  • Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer.

    Ken Ichi Takayama;Kuniko Horie-Inoue;Shintaro Katayama;Takashi Suzuki

  • The pruritus- and TH2-associated cytokine IL-31 promotes growth of sensory nerves

    Micha Feld;Richard Garcia;Jörg Buddenkotte;Shintaro Katayama

  • Single-Cell Analysis of Human Ovarian Cortex Identifies Distinct Cell Populations But No Oogonial Stem Cells

    Magdalena Wagner;Magdalena Wagner;Masahito Yoshihara;Iyadh Douagi;Anastasios Damdimopoulos

  • Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.

    Norihiro Maeda;Takeya Kasukawa;Rieko Oyama;Julian Gough

  • Unamplified cap analysis of gene expression on a single-molecule sequencer

    Mutsumi Kanamori-Katayama;Masayoshi Itoh;Hideya Kawaji;Timo Lassmann

  • miR-148a is an androgen-responsive microRNA that promotes LNCaP prostate cell growth by repressing its target CAND1 expression.

    T Murata;K Takayama;S Katayama;T Urano;T Urano

  • Human pluripotent reprogramming with CRISPR activators.

    Jere Weltner;Diego Balboa;Shintaro Katayama;Maxim Bespalov

  • Transcriptional network dynamics in macrophage activation.

    Roland Nilsson;Vladimir B. Bajic;Vladimir B. Bajic;Harukazu Suzuki;Diego di Bernardo

  • Characterization and target genes of nine human PRD-like homeobox domain genes expressed exclusively in early embryos

    Elo Madissoon;Eeva-Mari Jouhilahti;Liselotte Vesterlund;Virpi Töhönen

Frequent Co-Authors

Juha Kere
Juha Kere Karolinska Institute
David A. Hume
David A. Hume University of Queensland
Timothy Ravasi
Timothy Ravasi Okinawa Institute of Science and Technology
Boris Lenhard
Boris Lenhard Imperial College London
Alistair R. R. Forrest
Alistair R. R. Forrest Harry Perkins Institute of Medical Research

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