World's Best Scientists 2026 revealed!

D-Index & Metrics

Genetics

D-Index
111
Citations
157483
World Ranking
503
National Ranking
258

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • DNA
  • Genetics

His primary areas of investigation include Genetics, Gene, Human genome, Computational biology and Genome. His study in Genomics, Transcription, Polyadenylation, ENCODE and Transcriptome is done as part of Genetics. He usually deals with Polyadenylation and limits it to topics linked to Long non-coding RNA and Non-coding RNA.

Thomas R. Gingeras combines subjects such as GENCODE, DNase-Seq, Functional genomics and RNA-Seq with his study of ENCODE. The study incorporates disciplines such as Reference genome, Software, OS X, Polymorphic locus and Sequence annotation in addition to Computational biology. His Genome research includes themes of Chromatin and REDfly.

His most cited work include:

  • STAR: ultrafast universal RNA-seq aligner (15670 citations)
  • Expression monitoring by hybridization to high density oligonucleotide arrays (4313 citations)
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (4297 citations)

What are the main themes of his work throughout his whole career to date?

Thomas R. Gingeras focuses on Genetics, Gene, Computational biology, Genome and Molecular biology. His study in Human genome, RNA, Transcription, Transcriptome and Gene expression profiling falls within the category of Genetics. His work in Human genome is not limited to one particular discipline; it also encompasses Polyadenylation.

His Computational biology study combines topics in areas such as ENCODE, Alternative splicing, GENCODE, Genomics and Promoter. As a part of the same scientific study, Thomas R. Gingeras usually deals with the Genome, concentrating on Chromatin and frequently concerns with Transcriptional regulation. His studies in Molecular biology integrate themes in fields like Nucleic acid, Oligonucleotide, DNA, Endonuclease and Complementary DNA.

He most often published in these fields:

  • Genetics (55.52%)
  • Gene (39.13%)
  • Computational biology (32.44%)

What were the highlights of his more recent work (between 2011-2021)?

  • Genetics (55.52%)
  • Computational biology (32.44%)
  • Gene (39.13%)

In recent papers he was focusing on the following fields of study:

His main research concerns Genetics, Computational biology, Gene, RNA and Genome. His study involves Gene expression profiling, Human genome, Transcription, Intron and Drosophila melanogaster, a branch of Genetics. His Transcription research includes elements of Molecular biology and RNA polymerase II.

His work deals with themes such as Phenotype, Genomics, Chromatin, Promoter and Regulation of gene expression, which intersect with Computational biology. His RNA research is multidisciplinary, relying on both Candidate gene and Cell biology. His study in Genome is interdisciplinary in nature, drawing from both DNA binding site, ENCODE and DNA.

Between 2011 and 2021, his most popular works were:

  • STAR: ultrafast universal RNA-seq aligner (15670 citations)
  • Landscape of transcription in human cells (3260 citations)
  • Landscape of transcription in human cells (3260 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • DNA
  • Genome

Thomas R. Gingeras mainly focuses on Genetics, Computational biology, Gene, Human genome and Genome. His study in Genetics focuses on Gene expression profiling, Chromatin, ENCODE, Gene expression and Promoter. The various areas that Thomas R. Gingeras examines in his ENCODE study include RNA-Seq and DNA.

Thomas R. Gingeras has included themes like Database, Whole genome sequencing, Long non-coding RNA, Regulation of gene expression and Unix in his Computational biology study. His Genome research is multidisciplinary, incorporating perspectives in Phenotype and DNA binding site. His study looks at the relationship between RNA and fields such as Transcriptome, as well as how they intersect with chemical problems.

Best Publications

  • STAR: ultrafast universal RNA-seq aligner

    Alexander Dobin;Carrie A. Davis;Felix Schlesinger;Jorg Drenkow

  • Expression monitoring by hybridization to high density oligonucleotide arrays

    David J. Lockhart;Eugene L. Brown;Gordon G. Wong;Mark S. Chee

  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Ewan Birney;John A. Stamatoyannopoulos;Anindya Dutta;Roderic Guigó

  • Landscape of transcription in human cells

    Sarah Djebali;Carrie A. Davis;Angelika Merkel;Alex Dobin

  • The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

    Thomas Derrien;Rory Johnson;Giovanni Bussotti;Andrea Tanzer

  • The Transcriptional Landscape of the Mammalian Genome

    P. Carninci;T. Kasukawa;S. Katayama;J. Gough

  • CD127 expression inversely correlates with FoxP3 and suppressive function of human CD4+ T reg cells

    Weihong Liu;Amy L Putnam;Zhou Xu-yu;Gregory L. Szot

  • High density synthetic oligonucleotide arrays

    Robert J. Lipshutz;Stephen P.A. Fodor;Thomas R. Gingeras;David J. Lockhart

  • The ENCODE (ENCyclopedia of DNA elements) Project

    E. A. Feingold;P. J. Good;M. S. Guyer;S. Kamholz

  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

    Philipp Kapranov;Jill Cheng;Sujit Dike;David A. Nix

  • An integrated encyclopedia of DNA elements in the human genome

    Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins

  • Expanded encyclopaedias of DNA elements in the human and mouse genomes

    Jill E. Moore;Michael J. Purcaro;Henry E. Pratt;Charles B. Epstein

  • A comparative encyclopedia of DNA elements in the mouse genome

    Feng Yue;Feng Yue;Yong Cheng;Alessandra Breschi;Jeff Vierstra

  • A promoter-level mammalian expression atlas

    Alistair R.R. Forrest;Hideya Kawaji;Michael Rehli;J. Kenneth Baillie

  • Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse

    Bradley E. Bernstein;Bradley E. Bernstein;Bradley E. Bernstein;Michael Kamal;Kerstin Lindblad-Toh;Stefan Bekiranov

  • The developmental transcriptome of Drosophila melanogaster

    Brenton R. Graveley;Angela N. Brooks;Joseph W. Carlson;Michael O. Duff

  • Genome-wide analysis of estrogen receptor binding sites

    Jason S Carroll;Clifford A Meyer;Jun Song;Wei Li

  • A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

    Richard M. Myers;John Stamatoyannopoulos;Michael Snyder;Ian Dunham

  • Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

    Jill Cheng;Philipp Kapranov;Jorg Drenkow;Sujit Dike

  • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.

    Simon Cawley;Stefan Bekiranov;Huck H Ng;Huck H Ng;Huck H Ng;Philipp Kapranov

Frequent Co-Authors

Philipp Kapranov
Philipp Kapranov Huaqiao University
Roderic Guigó
Roderic Guigó Pompeu Fabra University
Michael Snyder
Michael Snyder Stanford University
Mark Gerstein
Mark Gerstein Yale University
John C. Guatelli
John C. Guatelli University of California, San Diego
Mark S. Chee
Mark S. Chee Illumina (United States)
Zhiping Weng
Zhiping Weng University of Massachusetts Chan Medical School

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