D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics D-index 50 Citations 16,766 125 World Ranking 3160 National Ranking 107

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • Bacteria
  • Enzyme

His main research concerns Gene cluster, Genetics, Gene, Genome and Computational biology. His Gene cluster study frequently draws parallels with other fields, such as Polyketide. His work deals with themes such as Annotation, ENCODE and Enzyme Commission number, which intersect with Polyketide.

His Genome research incorporates elements of Plasmid and Streptomyces. His Computational biology research incorporates themes from Substrate specificity, Peptide sequence and Biochemistry. His work carried out in the field of Genomics brings together such families of science as Genome mining, Secondary metabolite, Putative gene, Bacterial genome size and GenBank.

His most cited work include:

  • antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters (1341 citations)
  • antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters (1341 citations)
  • antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences (975 citations)

What are the main themes of his work throughout his whole career to date?

His primary areas of investigation include Computational biology, Gene, Genome, Gene cluster and Genetics. His Computational biology study incorporates themes from Natural product, Identification, Metabolomics and Genomics. He regularly links together related areas like Streptomyces in his Gene studies.

His research integrates issues of Microbiome, Annotation and Polyketide in his study of Genome. The study incorporates disciplines such as ENCODE, Subfamily, Biosynthesis and Homology in addition to Gene cluster. His study in Operon and Comparative genomics falls under the purview of Genetics.

He most often published in these fields:

  • Computational biology (57.04%)
  • Gene (46.48%)
  • Genome (35.92%)

What were the highlights of his more recent work (between 2019-2021)?

  • Computational biology (57.04%)
  • Genome (35.92%)
  • Gene (46.48%)

In recent papers he was focusing on the following fields of study:

The scientist’s investigation covers issues in Computational biology, Genome, Gene, Gene cluster and Genome mining. His biological study spans a wide range of topics, including Metagenomics, Natural product, Metabolomics and Genomics. His Genome research integrates issues from Polyketide and Streptomyces, Bacteria.

His Gene study combines topics in areas such as Microbiome, Synthetic biology and Enzyme. His Gene cluster study frequently links to related topics such as Protein domain. His Genome mining research focuses on UniProt and how it relates to Protein database, Posttranslational modification and A protein.

Between 2019 and 2021, his most popular works were:

  • A computational framework to explore large-scale biosynthetic diversity (124 citations)
  • Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology (65 citations)
  • ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining. (23 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • Bacteria
  • Enzyme

Marnix H. Medema spends much of his time researching Computational biology, Genome, Gene cluster, Genomics and Gene. His Computational biology research is multidisciplinary, relying on both Protein database and UniProt. His Genome study combines topics from a wide range of disciplines, such as ENCODE and Ecological selection.

Marnix H. Medema has included themes like Strain and Synteny in his Gene cluster study. His studies in Genomics integrate themes in fields like Omics data, Identification and Metabolomics. The concepts of his Gene study are interwoven with issues in Brassicaceae and Synthetic biology.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

Kai Blin;Simon Shaw;Katharina Steinke;Rasmus Villebro.
Nucleic Acids Research (2019)

1959 Citations

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

Tilmann Weber;Kai Blin;Srikanth Duddela;Daniel Krug.
Nucleic Acids Research (2015)

1859 Citations

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

Marnix H. Medema;Kai Blin;Peter Cimermancic;Victor de Jager;Victor de Jager.
Nucleic Acids Research (2011)

1579 Citations

antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification.

Kai Blin;Thomas Wolf;Marc G. Chevrette;Xiaowen Lu.
Nucleic Acids Research (2017)

1055 Citations

Structure and function of the global topsoil microbiome.

Mohammad Bahram;Mohammad Bahram;Mohammad Bahram;Falk Hildebrand;Sofia K. Forslund;Sofia K. Forslund;Jennifer L. Anderson.
Nature (2018)

896 Citations

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

Kai Blin;Marnix H. Medema;Daniyal Kazempour;Michael A. Fischbach.
Nucleic Acids Research (2013)

889 Citations

Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.

Peter Cimermancic;Marnix H. Medema;Jan Claesen;Kenji Kurita.
Cell (2014)

756 Citations

Minimum Information about a Biosynthetic Gene cluster.

Marnix H. Medema;Marnix H. Medema;Renzo Kottmann;Pelin Yilmaz;Matthew Cummings.
Nature Chemical Biology (2015)

654 Citations

NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity

Marc Röttig;Marnix H. Medema;Kai Blin;Tilmann Weber.
Nucleic Acids Research (2011)

618 Citations

Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea.

Katharina F. Ettwig;Seigo Shima;Katinka T. Van De Pas-Schoonen;Jörg Kahnt.
Environmental Microbiology (2008)

484 Citations

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