World's Best Scientists 2026 revealed!

D-Index & Metrics

Biology and Biochemistry

D-Index
126
Citations
91423
World Ranking
483
National Ranking
309

Overview

Pieter C. Dorrestein is affiliated with the University of California, San Diego in the United States. Their research spans multiple domains within biochemistry, genetics, and molecular biology, with a significant focus on metabolomics and mass spectrometry studies.

Their recent scholarly contributions include:

  • Feature-based molecular networking in the GNPS analysis environment (2020, Nature Methods)
  • Integrative analysis of multimodal mass spectrometry data in MZmine 3 (2023, Nature Biotechnology)
  • Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra (2020, Nature Biotechnology)
  • Reproducible molecular networking of untargeted mass spectrometry data using GNPS (2020, Nature Protocols)
  • Global chemical effects of the microbiome include new bile-acid conjugations (2020, Nature)

Frequent co-authors include:

  • Rob Knight
  • Mingxun Wang
  • Daniel Petras
  • Andrés Mauricio Caraballo-Rodríguez
  • Justin J. J. van der Hooft

Dorrestein's publication venues reflect a blend of preprint and peer-reviewed journals, notably:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • mSystems
  • Gastroenterology
  • Nature Communications

Their research fields of study primarily involve:

  • Biochemistry, Genetics and Molecular Biology
  • Medicine

Within these fields, Dorrestein has engaged extensively in subfields such as:

  • Molecular Biology
  • Physiology
  • Spectroscopy
  • Ecology
  • Pharmacology

Their main research topics focus on:

  • Metabolomics and Mass Spectrometry Studies
  • Gut microbiota and health
  • Diet and metabolism studies
  • Computational Drug Discovery Methods
  • Advanced Chemical Sensor Technologies
  • Analytical Chemistry and Chromatography
  • Microbial Natural Products and Biosynthesis

Best Publications

  • Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

    Mingxun Wang;Jeremy J Carver;Vanessa V Phelan;Laura M Sanchez

  • Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • Ribosomally synthesized and post-translationally modified peptide natural products: Overview and recommendations for a universal nomenclature

    Paul G. Arnison;Mervyn J. Bibb;Gabriele Bierbaum;Albert Alexander Bowers

  • SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information.

    Kai Dührkop;Markus Fleischauer;Marcus Ludwig;Alexander A. Aksenov

  • Feature-based molecular networking in the GNPS analysis environment.

    Louis-Félix Nothias;Louis-Félix Nothias;Daniel Petras;Daniel Petras;Robin Schmid;Kai Dührkop

  • Best practices for analysing microbiomes.

    Rob Knight;Alison Vrbanac;Bryn C. Taylor;Alexander Aksenov

  • Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis

    Teruaki Nakatsuji;Tiffany H. Chen;Saisindhu Narala;Kimberly A. Chun

  • Mass spectral molecular networking of living microbial colonies

    Jeramie D. Watrous;Patrick J. Roach;Theodore Alexandrov;Theodore Alexandrov;Brandi S. Heath

  • QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  • Minimum Information about a Biosynthetic Gene cluster.

    Marnix H. Medema;Marnix H. Medema;Renzo Kottmann;Pelin Yilmaz;Matthew Cummings

  • American Gut: an Open Platform for Citizen Science Microbiome Research.

    Daniel McDonald;Embriette Hyde;Justine W. Debelius;James T. Morton

  • Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra

    Kai Dührkop;Louis Felix Nothias;Markus Fleischauer;Raphael Reher

  • Microbiome-wide association studies link dynamic microbial consortia to disease

    Jack A. Gilbert;Robert A. Quinn;Justine Debelius;Zhenjiang Z. Xu

  • ncRNA- and Pc2 Methylation-Dependent Gene Relocation between Nuclear Structures Mediates Gene Activation Programs

    Liuqing Yang;Chunru Lin;Wen Liu;Jie Zhang

  • Molecular Networking as a Dereplication Strategy

    Jane Y. Yang;Laura M. Sanchez;Christopher M. Rath;Xueting Liu

  • Qiita: rapid, web-enabled microbiome meta-analysis.

    Antonio Gonzalez;Jose A. Navas-Molina;Jose A. Navas-Molina;Tomasz Kosciolek;Daniel McDonald

  • Specialized metabolites from the microbiome in health and disease

    Gil Sharon;Neha Garg;Justine W. Debelius;Rob Knight;Rob Knight

  • Inflammation-induced IgA + cells dismantle anti-liver cancer immunity

    Shabnam Shalapour;Xue Jia Lin;Xue Jia Lin;Ingmar N. Bastian;John Brain

  • Feature-based Molecular Networking in the GNPS Analysis Environment

    Louis Felix Nothias;Daniel Petras;Robin Schmid;Kai Dührkop

Frequent Co-Authors

Rob Knight
Rob Knight University of California, San Diego
William H. Gerwick
William H. Gerwick University of California, San Diego
Daniel Petras
Daniel Petras University of California, Riverside
Nuno Bandeira
Nuno Bandeira University of California, San Diego
Bradley S. Moore
Bradley S. Moore University of California, San Diego
Justin J. J. van der Hooft
Justin J. J. van der Hooft Wageningen University & Research
Theodore Alexandrov
Theodore Alexandrov European Molecular Biology Laboratory
Pavel A. Pevzner
Pavel A. Pevzner University of California, San Diego
Victor Nizet
Victor Nizet University of California, San Diego
David Gonzalez
David Gonzalez University of California, San Diego

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