World's Best Scientists 2026 revealed!

D-Index & Metrics

Computer Science

D-Index
97
Citations
90962
World Ranking
413
National Ranking
227

Biology and Biochemistry

D-Index
113
Citations
108138
World Ranking
844
National Ranking
529

Research.com Recognitions

  • 2018 - ACM Paris Kanellakis Theory and Practice Award For pioneering contributions to the theory, design, and implementation of algorithms for string reconstruction and to their applications in the assembly of genomes.
  • 2018 - Fellow of the American Association for the Advancement of Science (AAAS)
  • 2016 - Member of Academia Europaea
  • 2012 - Fellow of the International Society for Computational Biology
  • 2010 - ACM Fellow For contribution to algorithms for genome rearrangements, DNA sequencing, and proteomics.

Overview

Pavel A. Pevzner is affiliated with the University of California, San Diego in the United States. Their research spans multiple areas within biochemistry, genetics, and molecular biology, with a significant focus on computational methods applied to genomics and bioinformatics.

The scientist's research contributions are extensively documented through numerous publications, including articles and books. Notable recent papers include:

  • The complete sequence of a human genome, 2022, Science
  • metaFlye: scalable long-read metagenome assembly using repeat graphs, 2020, Nature Methods
  • Telomere-to-telomere assembly of a complete human X chromosome, 2020, Nature
  • Complete genomic and epigenetic maps of human centromeres, 2022, Science
  • Metaviral SPAdes: assembly of viruses from metagenomic data, 2020, Bioinformatics

The scientist frequently collaborates with several co-authors, among them:

  • Andrey V. Bzikadze
  • Dmitry Antipov
  • Mikhail Kolmogorov
  • Tatiana Dvorkina
  • Yana Safonova

Their work is published in a variety of venues, indicating a broad engagement with the scientific community. The most frequent publication venues are:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • Genome Research
  • Bioinformatics
  • Nature Biotechnology

Pavel A. Pevzner has also contributed to book publications, including a title published by Springer Science+Business Media:

  • Computational Advances in Bio and Medical Sciences, 2021

Their research covers several main fields and subfields of study:

  • Biochemistry, Genetics and Molecular Biology
  • Agricultural and Biological Sciences

  • Molecular Biology
  • Plant Science
  • Ecology
  • Genetics
  • Artificial Intelligence

The scientist's main topics of work include:

  • Genomics and Phylogenetic Studies
  • Chromosomal and Genetic Variations
  • Bacteriophages and microbial interactions
  • RNA and protein synthesis mechanisms
  • Plant Virus Research Studies
  • Algorithms and Data Compression
  • Genomic variations and chromosomal abnormalities

Awards received by Pavel A. Pevzner reflect recognition from various scientific organizations and include:

  • ACM Paris Kanellakis Theory and Practice Award, 2018, for pioneering contributions to algorithms for string reconstruction and genome assembly applications
  • Fellow of the American Association for the Advancement of Science (AAAS), 2018
  • Member of Academia Europaea, 2016
  • Fellow of the International Society for Computational Biology, 2012
  • ACM Fellow, 2010, for contributions to genome rearrangement algorithms, DNA sequencing, and proteomics

Best Publications

  • SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

    Anton Bankevich;Sergey Nurk;Dmitry Antipov;Alexey A. Gurevich

  • Initial sequencing and comparative analysis of the mouse genome.

    Robert H. Waterston;Kerstin Lindblad-Toh;Ewan Birney;Jane Rogers

  • Assembly of long, error-prone reads using repeat graphs

    Mikhail Kolmogorov;Jeffrey Yuan;Yu Lin;Pavel A. Pevzner

  • Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

    Mingxun Wang;Jeremy J Carver;Vanessa V Phelan;Laura M Sanchez

  • MetaSPAdes: A new versatile metagenomic assembler

    Sergey Nurk;Dmitry Meleshko;Anton Korobeynikov;Pavel A. Pevzner;Pavel A. Pevzner

  • The complete sequence of a human genome

    Unknown

  • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

    Ladeana W. Hillier;Webb Miller;Ewan Birney;Wesley Warren

  • Genome sequence of the Brown Norway rat yields insights into mammalian evolution

    Richard A. Gibbs;George M. Weinstock;Michael L. Metzker;Donna M. Muzny

  • De novo identification of repeat families in large genomes

    Alkes L. Price;Neil C. Jones;Pavel A. Pevzner

  • An Eulerian path approach to DNA fragment assembly

    Pavel A. Pevzner;Haixu Tang;Michael S. Waterman

  • Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals

    Sridhar Hannenhalli;Pavel A. Pevzner

  • Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

    Sergey Nurk;Anton Bankevich;Dmitry Antipov;Alexey A. Gurevich

  • MS-GF+ makes progress towards a universal database search tool for proteomics.

    Sangtae Kim;Pavel A. Pevzner

  • Computational molecular biology : an algorithmic approach

    Pavel A. Pevzner

  • metaFlye: scalable long-read metagenome assembly using repeat graphs

    Mikhail Kolmogorov;Derek M Bickhart;Bahar Behsaz;Alexey Gurevich

  • How to apply de Bruijn graphs to genome assembly

    Phillip E C Compeau;Pavel A Pevzner;Glenn Tesler

  • Genome Rearrangements and Sorting by Reversals

    Vineet Bafna;Pavel A. Pevzner

  • PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling

    Ari Frank;Pavel Pevzner

  • American Gut: an Open Platform for Citizen Science Microbiome Research.

    Daniel McDonald;Embriette Hyde;Justine W. Debelius;James T. Morton

  • De Novo Peptide Sequencing via Tandem Mass Spectrometry

    Vlado Dančík;Theresa A. Addona;Karl R. Clauser;James E. Vath

  • Combinatorial Approaches to Finding Subtle Signals in DNA Sequences

    Pavel A. Pevzner;Sing-Hoi Sze

  • Telomere-to-telomere assembly of a complete human X chromosome

    Karen H. Miga;Sergey Koren;Arang Rhie;Mitchell R. Vollger

  • An Introduction to Bioinformatics Algorithms

    Neil C. Jones;Pavel Pevzner

  • InsPecT: identification of posttranslationally modified peptides from tandem mass spectra.

    Stephen Tanner;Hongjun Shu;Ari Frank;Ling-Chi Wang

Frequent Co-Authors

Pieter C. Dorrestein
Pieter C. Dorrestein University of California, San Diego
Nuno Bandeira
Nuno Bandeira University of California, San Diego
Vineet Bafna
Vineet Bafna University of California, San Diego
William H. Gerwick
William H. Gerwick University of California, San Diego
Haixu Tang
Haixu Tang Indiana University
Guillaume Bourque
Guillaume Bourque McGill University
Michael S. Waterman
Michael S. Waterman University of Southern California
Ljiljana Paša-Tolić
Ljiljana Paša-Tolić Environmental Molecular Sciences Laboratory
Rob Knight
Rob Knight University of California, San Diego
Alla Lapidus
Alla Lapidus Saint Petersburg State University

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