Her main research concerns Genetics, Genome, Genomics, Antibiotic resistance and Klebsiella pneumoniae. Genetics and Microevolution are frequently intertwined in her study. Kathryn E. Holt is studying Whole genome sequencing, which is a component of Genome.
Her Genomics research integrates issues from Sequence assembly, Computational biology, Contig and Bacterial genome size. Antibiotic resistance is a subfield of Microbiology that Kathryn E. Holt investigates. Her biological study spans a wide range of topics, including Population genomics, Locus and Virulence.
Kathryn E. Holt focuses on Genetics, Genome, Antibiotic resistance, Microbiology and Gene. Her Genome study combines topics from a wide range of disciplines, such as Computational biology, Locus and Virulence. Her work carried out in the field of Computational biology brings together such families of science as Nanopore sequencing and Bacterial genome size.
Her Virulence study incorporates themes from Serotype, Comparative genomics, Phylogenetics, GenBank and Klebsiella pneumoniae. Her Antibiotic resistance research is multidisciplinary, relying on both Multiple drug resistance, Drug resistance, Typhoid fever, Salmonella typhi and Genotype. Her Horizontal gene transfer, Mobile genetic elements and Escherichia coli study in the realm of Gene interacts with subjects such as Prophage.
Kathryn E. Holt spends much of her time researching Antibiotic resistance, Gene, Genome, Computational biology and Klebsiella pneumoniae. Her Antibiotic resistance research is multidisciplinary, incorporating perspectives in Typhoid fever, Salmonella typhi, Drug resistance and Genotype. Gene is a subfield of Genetics that Kathryn E. Holt explores.
Kathryn E. Holt is involved in the study of Genome that focuses on Whole genome sequencing in particular. Her Computational biology study integrates concerns from other disciplines, such as Genome-wide association study, Identification, Nanopore sequencing, Allergy and Respiratory dysfunction. Kathryn E. Holt has researched Klebsiella pneumoniae in several fields, including Species complex, Genomics, Klebsiella, Intensive care unit and Virulence.
Kathryn E. Holt mostly deals with Genome, Klebsiella pneumoniae, Drug resistance, Antibiotic resistance and Genetics. Her Genome research incorporates elements of Evolutionary biology, Computational biology and Locus. Her study looks at the intersection of Klebsiella pneumoniae and topics like Virulence with Microbiology, Serotype, Klebsiella and Global population.
Her study in Drug resistance is interdisciplinary in nature, drawing from both Veterinary medicine and Genotype. Her research integrates issues of Clade, Subclade, Parasitology, Typhoid fever and Salmonella typhi in her study of Genotype. Her work in the fields of Shigella, Population genomics, Genomics and Molecular epidemiology overlaps with other areas such as Public health surveillance.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
Ryan R. Wick;Louise M. Judd;Claire L. Gorrie;Kathryn E. Holt.
PLOS Computational Biology (2017)
Bandage: interactive visualization of de novo genome assemblies
Ryan R. Wick;Mark B. Schultz;Justin Zobel;Kathryn E. Holt.
Performance of neural network basecalling tools for Oxford Nanopore sequencing.
Ryan R. Wick;Louise M. Judd;Kathryn E. Holt;Kathryn E. Holt.
Genome Biology (2019)
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
Iñaki Comas;Mireia Coscolla;Mireia Coscolla;Tao Luo;Sonia Borrell;Sonia Borrell.
Nature Genetics (2013)
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health
Kathryn E. Holt;Heiman Wertheim;Ruth N. Zadoks;Stephen Baker.
Proceedings of the National Academy of Sciences of the United States of America (2015)
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
Michael Inouye;Harriet Dashnow;Harriet Dashnow;Lesley Ann Raven;Mark B. Schultz.
Genome Medicine (2014)
The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development
Shu Mei Teo;Danny Mok;Kym Pham;Merci Kusel.
Cell Host & Microbe (2015)
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
Robert A. Kingsley;Chisomo L. Msefula;Nicholas R. Thomson;Samuel Kariuki;Samuel Kariuki.
Genome Research (2009)
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
Kathryn E. Holt;Julian Parkhill;Camila J. Mazzoni;Philippe Roumagnac.
Nature Genetics (2008)
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
Vanessa K. Wong;Vanessa K. Wong;Stephen Baker;Stephen Baker;Stephen Baker;Derek J. Pickard;Julian Parkhill.
Nature Genetics (2015)
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