D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Microbiology D-index 69 Citations 17,521 206 World Ranking 1263 National Ranking 108
Genetics D-index 67 Citations 21,173 196 World Ranking 1738 National Ranking 226

Overview

What is she best known for?

The fields of study she is best known for:

  • Gene
  • Bacteria
  • Genome

Her main research concerns Genetics, Genome, Genomics, Antibiotic resistance and Klebsiella pneumoniae. Genetics and Microevolution are frequently intertwined in her study. Kathryn E. Holt is studying Whole genome sequencing, which is a component of Genome.

Her Genomics research integrates issues from Sequence assembly, Computational biology, Contig and Bacterial genome size. Antibiotic resistance is a subfield of Microbiology that Kathryn E. Holt investigates. Her biological study spans a wide range of topics, including Population genomics, Locus and Virulence.

Her most cited work include:

  • Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. (1651 citations)
  • Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans (648 citations)
  • Bandage: interactive visualization of de novo genome assemblies (646 citations)

What are the main themes of her work throughout her whole career to date?

Kathryn E. Holt focuses on Genetics, Genome, Antibiotic resistance, Microbiology and Gene. Her Genome study combines topics from a wide range of disciplines, such as Computational biology, Locus and Virulence. Her work carried out in the field of Computational biology brings together such families of science as Nanopore sequencing and Bacterial genome size.

Her Virulence study incorporates themes from Serotype, Comparative genomics, Phylogenetics, GenBank and Klebsiella pneumoniae. Her Antibiotic resistance research is multidisciplinary, relying on both Multiple drug resistance, Drug resistance, Typhoid fever, Salmonella typhi and Genotype. Her Horizontal gene transfer, Mobile genetic elements and Escherichia coli study in the realm of Gene interacts with subjects such as Prophage.

She most often published in these fields:

  • Genetics (51.94%)
  • Genome (46.94%)
  • Antibiotic resistance (50.56%)

What were the highlights of her more recent work (between 2019-2021)?

  • Antibiotic resistance (50.56%)
  • Gene (35.56%)
  • Genome (46.94%)

In recent papers she was focusing on the following fields of study:

Kathryn E. Holt spends much of her time researching Antibiotic resistance, Gene, Genome, Computational biology and Klebsiella pneumoniae. Her Antibiotic resistance research is multidisciplinary, incorporating perspectives in Typhoid fever, Salmonella typhi, Drug resistance and Genotype. Gene is a subfield of Genetics that Kathryn E. Holt explores.

Kathryn E. Holt is involved in the study of Genome that focuses on Whole genome sequencing in particular. Her Computational biology study integrates concerns from other disciplines, such as Genome-wide association study, Identification, Nanopore sequencing, Allergy and Respiratory dysfunction. Kathryn E. Holt has researched Klebsiella pneumoniae in several fields, including Species complex, Genomics, Klebsiella, Intensive care unit and Virulence.

Between 2019 and 2021, her most popular works were:

  • Population genomics of Klebsiella pneumoniae. (75 citations)
  • Population genomics of Klebsiella pneumoniae. (75 citations)
  • Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia (35 citations)

In her most recent research, the most cited papers focused on:

  • Gene
  • Bacteria
  • Genome

Kathryn E. Holt mostly deals with Genome, Klebsiella pneumoniae, Drug resistance, Antibiotic resistance and Genetics. Her Genome research incorporates elements of Evolutionary biology, Computational biology and Locus. Her study looks at the intersection of Klebsiella pneumoniae and topics like Virulence with Microbiology, Serotype, Klebsiella and Global population.

Her study in Drug resistance is interdisciplinary in nature, drawing from both Veterinary medicine and Genotype. Her research integrates issues of Clade, Subclade, Parasitology, Typhoid fever and Salmonella typhi in her study of Genotype. Her work in the fields of Shigella, Population genomics, Genomics and Molecular epidemiology overlaps with other areas such as Public health surveillance.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Ryan R. Wick;Louise M. Judd;Claire L. Gorrie;Kathryn E. Holt.
PLOS Computational Biology (2017)

3216 Citations

Bandage: interactive visualization of de novo genome assemblies

Ryan R. Wick;Mark B. Schultz;Justin Zobel;Kathryn E. Holt.
Bioinformatics (2015)

1142 Citations

Performance of neural network basecalling tools for Oxford Nanopore sequencing.

Ryan R. Wick;Louise M. Judd;Kathryn E. Holt;Kathryn E. Holt.
Genome Biology (2019)

1091 Citations

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

Iñaki Comas;Mireia Coscolla;Mireia Coscolla;Tao Luo;Sonia Borrell;Sonia Borrell.
Nature Genetics (2013)

1059 Citations

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

Kathryn E. Holt;Heiman Wertheim;Ruth N. Zadoks;Stephen Baker.
Proceedings of the National Academy of Sciences of the United States of America (2015)

850 Citations

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

Michael Inouye;Harriet Dashnow;Harriet Dashnow;Lesley Ann Raven;Mark B. Schultz.
Genome Medicine (2014)

817 Citations

The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development

Shu Mei Teo;Danny Mok;Kym Pham;Merci Kusel.
Cell Host & Microbe (2015)

732 Citations

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

Robert A. Kingsley;Chisomo L. Msefula;Nicholas R. Thomson;Samuel Kariuki;Samuel Kariuki.
Genome Research (2009)

557 Citations

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

Kathryn E. Holt;Julian Parkhill;Camila J. Mazzoni;Philippe Roumagnac.
Nature Genetics (2008)

540 Citations

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

Vanessa K. Wong;Vanessa K. Wong;Stephen Baker;Stephen Baker;Stephen Baker;Derek J. Pickard;Julian Parkhill.
Nature Genetics (2015)

410 Citations

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