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Sebastien Gagneux

Sebastien Gagneux

University of Basel
Switzerland

Award Badge
Microbiology
Switzerland
2022

D-Index & Metrics

Discipline name D-Index World Ranking Current World Ranking National Ranking Current National Ranking Publications Citations
Microbiology 88 755 669 21 20 269 30233
Medicine 88 13083 12315 185 178 287 30880

Sebastien Gagneux publications per year

The chart shows the history of publications by Sebastien Gagneux between 1999 and 2025, highlighting the no. of papers published in each year and offering an overview of the publication velocity of this scholar. Sebastien Gagneux published across 27 years, from 1999 to 2025, averaging 12.2 papers a year. Output peaked at 29 publications in 2025. 47 of the 329 publications appeared in the last two years.

No. of publications
5 10 15 20 25
Bar chart. Horizontal axis: year, 1999 to 2025. Vertical axis: number of publications, 0 to 29. Peak 29 publications in 2025. 1999: 2 publications 2000: 1 publication 2001: 4 publications 2002: 2 publications 2003: 0 publications 2004: 1 publication 2005: 4 publications 2006: 4 publications 2007: 6 publications 2008: 5 publications 2009: 8 publications 2010: 8 publications 2011: 9 publications 2012: 18 publications 2013: 18 publications 2014: 15 publications 2015: 21 publications 2016: 12 publications 2017: 17 publications 2018: 26 publications 2019: 25 publications 2020: 23 publications 2021: 28 publications 2022: 12 publications 2023: 13 publications 2024: 18 publications 2025: 29 publications
1999 2025

329 publications in total across all disciplines

View publications per year as a table
Sebastien Gagneux: publications per year, 1999 to 2025
Year Publications
1999 2
2000 1
2001 4
2002 2
2003 0
2004 1
2005 4
2006 4
2007 6
2008 5
2009 8
2010 8
2011 9
2012 18
2013 18
2014 15
2015 21
2016 12
2017 17
2018 26
2019 25
2020 23
2021 28
2022 12
2023 13
2024 18
2025 29
Total 329
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Sebastien Gagneux publication distribution in Microbiology in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Microbiology in 2026. The highlighted bar marks where Sebastien Gagneux sits on this spectrum.

No. of scientists
50 100 150 200 250
Bar chart with 64 bars. Horizontal axis: publications, 55–64 to 679+. Vertical axis: number of scientists, 0 to 288. Most scientists, 288, have 135–144 publications. The last bar groups every scientist with 679 publications or more. The highlighted bar, 265–274 publications, is where this scientist sits. 55–64 publications: 8 scientists 65–74 publications: 29 scientists 75–84 publications: 55 scientists 85–94 publications: 112 scientists 95–104 publications: 137 scientists 105–114 publications: 190 scientists 115–124 publications: 235 scientists 125–134 publications: 234 scientists 135–144 publications: 288 scientists 145–154 publications: 265 scientists 155–164 publications: 264 scientists 165–174 publications: 253 scientists 175–184 publications: 276 scientists 185–194 publications: 190 scientists 195–204 publications: 234 scientists 205–214 publications: 208 scientists 215–224 publications: 198 scientists 225–234 publications: 155 scientists 235–244 publications: 161 scientists 245–254 publications: 160 scientists 255–264 publications: 146 scientists 265–274 publications: 139 scientists 275–284 publications: 148 scientists 285–294 publications: 115 scientists 295–304 publications: 96 scientists 305–314 publications: 88 scientists 315–324 publications: 106 scientists 325–334 publications: 65 scientists 335–344 publications: 76 scientists 345–354 publications: 64 scientists 355–364 publications: 62 scientists 365–374 publications: 65 scientists 375–384 publications: 61 scientists 385–394 publications: 34 scientists 395–404 publications: 44 scientists 405–414 publications: 36 scientists 415–424 publications: 35 scientists 425–434 publications: 29 scientists 435–444 publications: 33 scientists 445–454 publications: 34 scientists 455–464 publications: 25 scientists 465–474 publications: 26 scientists 475–484 publications: 20 scientists 485–494 publications: 19 scientists 495–504 publications: 16 scientists 505–514 publications: 17 scientists 515–524 publications: 23 scientists 525–534 publications: 14 scientists 535–544 publications: 14 scientists 545–554 publications: 18 scientists 555–564 publications: 12 scientists 565–574 publications: 7 scientists 575–584 publications: 9 scientists 585–594 publications: 9 scientists 595–604 publications: 9 scientists 605–614 publications: 7 scientists 615–624 publications: 9 scientists 625–634 publications: 7 scientists 635–644 publications: 4 scientists 645–654 publications: 5 scientists 655–664 publications: 6 scientists 665–674 publications: 7 scientists 675–678 publications: 3 scientists 679+ publications: 99 scientists
55–64 publications 679+

This scientist: 269 publications — 70th percentile

70% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 679 publications or more.

View publications distribution as a table
Number of Microbiology scientists by publication count, Research.com 2026 ranking edition. Based on 5,513 ranked scientists.
Publications Scientists This scientist
55–64 8
65–74 29
75–84 55
85–94 112
95–104 137
105–114 190
115–124 235
125–134 234
135–144 288
145–154 265
155–164 264
165–174 253
175–184 276
185–194 190
195–204 234
205–214 208
215–224 198
225–234 155
235–244 161
245–254 160
255–264 146
265–274 139 269
275–284 148
285–294 115
295–304 96
305–314 88
315–324 106
325–334 65
335–344 76
345–354 64
355–364 62
365–374 65
375–384 61
385–394 34
395–404 44
405–414 36
415–424 35
425–434 29
435–444 33
445–454 34
455–464 25
465–474 26
475–484 20
485–494 19
495–504 16
505–514 17
515–524 23
525–534 14
535–544 14
545–554 18
555–564 12
565–574 7
575–584 9
585–594 9
595–604 9
605–614 7
615–624 9
625–634 7
635–644 4
645–654 5
655–664 6
665–674 7
675–678 3
679+ 99
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Sebastien Gagneux D-index placement in Microbiology in 2026

The chart shows the D-index (discipline H-index) distribution of Microbiology scientists ranked by Research.com in 2026. The highlighted bar marks where Sebastien Gagneux sits on this spectrum.

No. of scientists
50 100 150
Bar chart with 88 bars. Horizontal axis: D-Index, 40 to 127+. Vertical axis: number of scientists, 0 to 162. Most scientists, 162, have 58 D-Index. The last bar groups every scientist with 127 D-Index or more. The highlighted bar, 88 D-Index, is where this scientist sits. 40 D-Index: 30 scientists 41 D-Index: 86 scientists 42 D-Index: 90 scientists 43 D-Index: 117 scientists 44 D-Index: 122 scientists 45 D-Index: 123 scientists 46 D-Index: 108 scientists 47 D-Index: 110 scientists 48 D-Index: 106 scientists 49 D-Index: 109 scientists 50 D-Index: 129 scientists 51 D-Index: 111 scientists 52 D-Index: 116 scientists 53 D-Index: 127 scientists 54 D-Index: 134 scientists 55 D-Index: 134 scientists 56 D-Index: 112 scientists 57 D-Index: 136 scientists 58 D-Index: 162 scientists 59 D-Index: 151 scientists 60 D-Index: 139 scientists 61 D-Index: 123 scientists 62 D-Index: 126 scientists 63 D-Index: 144 scientists 64 D-Index: 109 scientists 65 D-Index: 103 scientists 66 D-Index: 124 scientists 67 D-Index: 112 scientists 68 D-Index: 103 scientists 69 D-Index: 131 scientists 70 D-Index: 94 scientists 71 D-Index: 93 scientists 72 D-Index: 96 scientists 73 D-Index: 92 scientists 74 D-Index: 80 scientists 75 D-Index: 66 scientists 76 D-Index: 87 scientists 77 D-Index: 60 scientists 78 D-Index: 73 scientists 79 D-Index: 59 scientists 80 D-Index: 57 scientists 81 D-Index: 55 scientists 82 D-Index: 47 scientists 83 D-Index: 77 scientists 84 D-Index: 50 scientists 85 D-Index: 45 scientists 86 D-Index: 42 scientists 87 D-Index: 41 scientists 88 D-Index: 32 scientists 89 D-Index: 38 scientists 90 D-Index: 35 scientists 91 D-Index: 34 scientists 92 D-Index: 27 scientists 93 D-Index: 26 scientists 94 D-Index: 33 scientists 95 D-Index: 22 scientists 96 D-Index: 37 scientists 97 D-Index: 22 scientists 98 D-Index: 21 scientists 99 D-Index: 22 scientists 100 D-Index: 30 scientists 101 D-Index: 16 scientists 102 D-Index: 20 scientists 103 D-Index: 17 scientists 104 D-Index: 19 scientists 105 D-Index: 16 scientists 106 D-Index: 19 scientists 107 D-Index: 18 scientists 108 D-Index: 14 scientists 109 D-Index: 10 scientists 110 D-Index: 9 scientists 111 D-Index: 7 scientists 112 D-Index: 11 scientists 113 D-Index: 6 scientists 114 D-Index: 15 scientists 115 D-Index: 10 scientists 116 D-Index: 12 scientists 117 D-Index: 7 scientists 118 D-Index: 10 scientists 119 D-Index: 10 scientists 120 D-Index: 11 scientists 121 D-Index: 2 scientists 122 D-Index: 7 scientists 123 D-Index: 12 scientists 124 D-Index: 5 scientists 125 D-Index: 9 scientists 126 D-Index: 6 scientists 127+ D-Index: 95 scientists
40 D-Index 127+

This scientist: 88 D-Index — 87th percentile

87% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 127 D-Index or more.

View D-Index distribution as a table
Number of Microbiology scientists by D-index, Research.com 2026 ranking edition. Based on 5,513 ranked scientists.
D-Index Scientists This scientist
40 30
41 86
42 90
43 117
44 122
45 123
46 108
47 110
48 106
49 109
50 129
51 111
52 116
53 127
54 134
55 134
56 112
57 136
58 162
59 151
60 139
61 123
62 126
63 144
64 109
65 103
66 124
67 112
68 103
69 131
70 94
71 93
72 96
73 92
74 80
75 66
76 87
77 60
78 73
79 59
80 57
81 55
82 47
83 77
84 50
85 45
86 42
87 41
88 32 88
89 38
90 35
91 34
92 27
93 26
94 33
95 22
96 37
97 22
98 21
99 22
100 30
101 16
102 20
103 17
104 19
105 16
106 19
107 18
108 14
109 10
110 9
111 7
112 11
113 6
114 15
115 10
116 12
117 7
118 10
119 10
120 11
121 2
122 7
123 12
124 5
125 9
126 6
127+ 95
Download as CSV

Research.com Recognitions

  • 2022 - Research.com Microbiology in Switzerland Leader Award

Overview

Sebastien Gagneux is affiliated with the University of Basel in Switzerland. Their research primarily focuses on the field of Medicine, with particular emphasis on Infectious Diseases, Epidemiology, Molecular Biology, Surgery, and Genetics.

The scientist's work encompasses several main topics, including:

  • Tuberculosis Research and Epidemiology
  • Mycobacterium research and diagnosis
  • Diagnosis and treatment of tuberculosis
  • Infectious Diseases and Tuberculosis
  • Evolution and Genetic Dynamics
  • Genomics and Phylogenetic Studies
  • Antibiotic Resistance in Bacteria

Frequent co-authors with whom they have collaborated include:

  • Sònia Borrell
  • Daniela Brites
  • Miriam Reinhard
  • Chloé Loiseau
  • Klaus Reither

Sebastien Gagneux has contributed to publications in multiple venues where they published more than once. The most frequent venues include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Antimicrobial Agents and Chemotherapy
  • Nature Communications
  • Microbial Genomics
  • The Lancet Microbe

Some of the recent papers authored or co-authored by Sebastien Gagneux are:

  • "A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region" (2020, Nature Communications)
  • "Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history" (2021, Microbial Genomics)
  • "Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1β production" (2020, Nature Communications)
  • "Evaluation of Nanopore sequencing for Mycobacterium tuberculosis drug susceptibility testing and outbreak investigation: a genomic analysis" (2022, The Lancet Microbe)
  • "Bedaquiline resistance in patients with drug-resistant tuberculosis in Cape Town, South Africa: a retrospective longitudinal cohort study" (2023, The Lancet Microbe)

Best Publications

  • Variable host-pathogen compatibility in Mycobacterium tuberculosis.

    Sebastien Gagneux;Kathryn DeRiemer;Tran Van;Midori Kato-Maeda

  • Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

    Iñaki Comas;Mireia Coscolla;Mireia Coscolla;Tao Luo;Sonia Borrell;Sonia Borrell

  • Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development

    Sebastien Gagneux;Peter M Small;Peter M Small

  • Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

    Iñaki Comas;Jaidip Chakravartti;Peter M Small;James Galagan

  • The competitive cost of antibiotic resistance in Mycobacterium tuberculosis.

    Sebastien Gagneux;Clara Davis Long;Peter M. Small;Peter M. Small;Tran Van

  • High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography.

    Ruth Hershberg;Mikhail Lipatov;Peter M Small;Peter M Small;Hadar Sheffer

  • Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes.

    Iñaki Comas;Sonia Borrell;Sonia Borrell;Andreas Roetzer;Graham Rose

  • Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

    Kirsten I. Bos;Kelly M. Harkins;Alexander Herbig;Mireia Coscolla

  • Ecology and evolution of Mycobacterium tuberculosis.

    Sebastien Gagneux;Sebastien Gagneux

  • The influence of host and bacterial genotype on the development of disseminated disease with Mycobacterium tuberculosis

    Maxine Caws;Maxine Caws;Guy Thwaites;Sarah Dunstan;Sarah Dunstan;Thomas R. Hawn

  • Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

    Matthias Merker;Camille Blin;Stefano Mona;Nicolas Duforet-Frebourg

  • Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

    Maha R Farhat;B Jesse Shapiro;Karen J Kieser;Razvan Sultana

  • Host-pathogen coevolution in human tuberculosis.

    Sebastien Gagneux

  • Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

    Iñaki Comas;Susanne Homolka;Stefan Niemann;Sebastien Gagneux

  • Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

    Christopher B Ford;Rupal R Shah;Midori Kato Maeda;Sebastien Gagneux;Sebastien Gagneux

  • Consequences of genomic diversity in Mycobacterium tuberculosis.

    Mireia Coscolla;Sebastien Gagneux;Sebastien Gagneux

  • Antimicrobial resistance in Mycobacterium tuberculosis: mechanistic and evolutionary perspectives

    Sebastian M. Gygli;Sebastian M. Gygli;Sonia Borrell;Sonia Borrell;Andrej Trauner;Andrej Trauner;Sebastien Gagneux;Sebastien Gagneux

  • Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages.

    David Stucki;David Stucki;Daniela Brites;Daniela Brites;Leïla Jeljeli;Mireia Coscolla;Mireia Coscolla

  • Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.

    Conor J. Meehan;Galo A. Goig;Thomas A. Kohl;Lennert Verboven

  • Mycobacterium africanum—Review of an Important Cause of Human Tuberculosis in West Africa

    Bouke C. de Jong;Martin Antonio;Sebastien Gagneux;Sebastien Gagneux

  • Progression to Active Tuberculosis, but Not Transmission, Varies by Mycobacterium tuberculosis Lineage in The Gambia

    Bouke C de Jong;Philip C Hill;Alex Aiken;Timothy Awine

Frequent Co-Authors

Sonia Borrell
Sonia Borrell Swiss Tropical and Public Health Institute
Stefan Niemann
Stefan Niemann Research Center Borstel - Leibniz-Center for Medicine and Biosciences
Robert J. Wilkinson
Robert J. Wilkinson The Francis Crick Institute
Matthias Egger
Matthias Egger University of Bern
Peter M. Small
Peter M. Small Bill & Melinda Gates Foundation
Julian Parkhill
Julian Parkhill University of Cambridge
Erik C. Böttger
Erik C. Böttger University of Zurich
Moses Joloba
Moses Joloba Makerere University
Simon R. Harris
Simon R. Harris Wellcome Sanger Institute
Christian Beisel
Christian Beisel ETH Zurich

External Links

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Related Online Degrees & Career Pathways

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Additionally, combining microbiology with nursing can lead to roles like becoming a functional medicine nurse practitioner programs. These programs emphasize holistic and integrative care, merging clinical knowledge with an understanding of biological systems at a microscopic level.

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Best Scientists Citing Sebastien Gagneux

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Publications: 128

Robin M. Warren

Robin M. Warren

Stellenbosch University

Publications: 93

Nalin Rastogi

Nalin Rastogi

Institut Pasteur

Publications: 82

Dick van Soolingen

Dick van Soolingen

National Institute for Public Health and the Environment

Publications: 81

Julian Parkhill

Julian Parkhill

University of Cambridge

Publications: 59

Marcel A. Behr

Marcel A. Behr

McGill University

Publications: 58

Martin Antonio

Martin Antonio

London School of Hygiene & Tropical Medicine

Publications: 56

Igor Mokrousov

Igor Mokrousov

St. Petersburg Pasteur Institute

Publications: 54

Robert J. Wilkinson

Robert J. Wilkinson

The Francis Crick Institute

Publications: 54

Daniela M. Cirillo

Daniela M. Cirillo

Vita-Salute San Raffaele University

Publications: 53

Taane G. Clark

Taane G. Clark

London School of Hygiene & Tropical Medicine

Publications: 52

Christophe Sola

Christophe Sola

University of Paris-Saclay

Publications: 51

Derrick W. Crook

Derrick W. Crook

University of Oxford

Publications: 47

Roland Brosch

Roland Brosch

Institut Pasteur

Publications: 47

Carlos Martín

Carlos Martín

Instituto de Salud Carlos III

Publications: 46

Alimuddin Zumla

Alimuddin Zumla

University College London

Publications: 46

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