His primary scientific interests are in Genetics, Genome, Genomics, Antibiotic resistance and Whole genome sequencing. His work in Molecular epidemiology, Phylogenetic tree, Phylogenetics, Virulence and Lineage are all subfields of Genetics research. The Molecular epidemiology study combines topics in areas such as Transmission, Outbreak, Virology and Antigenic variation.
The various areas that Simon R. Harris examines in his Phylogenetics study include Evolutionary biology and Eukaryote. He has included themes like Genome-wide association study, Computational biology and DNA sequencing in his Genome study. His Antibiotic resistance research incorporates themes from Streptococcus pneumoniae and Pneumococcal infections.
Genetics, Genome, Microbiology, Whole genome sequencing and Antibiotic resistance are his primary areas of study. His Genetics study focuses mostly on Gene, Phylogenetics, Phylogenetic tree, Virulence and Single-nucleotide polymorphism. His Genome research integrates issues from Computational biology and DNA sequencing.
His studies deal with areas such as Methicillin-resistant Staphylococcus aureus, Multilocus sequence typing, Streptococcus zooepidemicus and Virology as well as Microbiology. He combines subjects such as Genotype, Multiple drug resistance and Neisseria gonorrhoeae with his study of Antibiotic resistance. His Outbreak research focuses on Transmission and how it relates to Epidemiology and Molecular epidemiology.
His primary areas of investigation include Genome, Neisseria gonorrhoeae, Antibiotic resistance, Genetics and Computational biology. A large part of his Genome studies is devoted to Reference genome. The study incorporates disciplines such as Whole genome sequencing, Viral phylodynamics, Genotype, Random forest and Drug resistance in addition to Antibiotic resistance.
His study in Drug resistance is interdisciplinary in nature, drawing from both Staphylococcal infections, Clone, Methicillin-resistant Staphylococcus aureus and Outbreak. His biological study spans a wide range of topics, including Range and Melioidosis. His studies in Computational biology integrate themes in fields like Small intestine, Selection, Genomics, DNA sequencing and Metagenomics.
Simon R. Harris spends much of his time researching Genome, Genetics, Antibiotic resistance, Neisseria gonorrhoeae and Phylogenetic tree. His Genome study typically links adjacent topics like Computational biology. Simon R. Harris mostly deals with Multiple drug resistance in his studies of Genetics.
Simon R. Harris interconnects Whole genome sequencing and Drug resistance in the investigation of issues within Antibiotic resistance. His Phylogenetic tree research is multidisciplinary, incorporating perspectives in Molecular epidemiology and Phylogenetics. His study in the field of Lineage is also linked to topics like Fungal genetics.
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A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.
Michael Quail;Miriam E. Smith;Paul Coupland;Thomas D. Otto.
BMC Genomics (2012)
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
Nicholas J. Croucher;Andrew J. Page;Thomas R. Connor;Aidan J. Delaney.
Nucleic Acids Research (2015)
Evolution of MRSA During Hospital Transmission and Intercontinental Spread
Simon R. Harris;Edward J. Feil;Matthew T. G. Holden;Michael A. Quail.
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
Iñaki Comas;Mireia Coscolla;Mireia Coscolla;Tao Luo;Sonia Borrell;Sonia Borrell.
Nature Genetics (2013)
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
Tim Carver;Simon R. Harris;Matthew Berriman;Julian Parkhill.
Rapid Pneumococcal Evolution in Response to Clinical Interventions
Nicholas J. Croucher;Simon R. Harris;Christophe Fraser;Michael A. Quail.
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak.
Claudio U. Köser;Claudio U. Köser;Matthew T.G. Holden;Matthew J. Ellington;Edward J P Cartwright;Edward J P Cartwright.
The New England Journal of Medicine (2012)
Emergence and global spread of epidemic healthcare-associated Clostridium difficile.
Miao He;Fabio Miyajima;Paul Roberts;Louise Ellison.
Nature Genetics (2013)
Evidence for several waves of global transmission in the seventh cholera pandemic
Ankur Mutreja;Dong Wook Kim;Dong Wook Kim;Nicholas R Thomson;Thomas R Connor.
Circlator: automated circularization of genome assemblies using long sequencing reads
Martin Hunt;Nishadi De Silva;Thomas D. Otto;Julian Parkhill.
Genome Biology (2015)
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