Ryan R. Wick

Best Publications

• Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

  Ryan R. Wick;Louise M. Judd;Claire L. Gorrie;Kathryn E. Holt

  8117
  Citations

• Performance of neural network basecalling tools for Oxford Nanopore sequencing.

  Ryan R. Wick;Louise M. Judd;Kathryn E. Holt;Kathryn E. Holt

  3064
  Citations

• Completing bacterial genome assemblies with multiplex MinION sequencing

  Ryan R. Wick;Louise M. Judd;Claire L. Gorrie;Kathryn E. Holt

  1066
  Citations

• A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex.

  Margaret M. C. Lam;Ryan R. Wick;Stephen C. Watts;Louise T. Cerdeira

  908
  Citations

• Polypolish: Short-read polishing of long-read bacterial genome assemblies

  Unknown

  667
  Citations

• Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients.

  Claire L. Gorrie;Mirjana Mirčeta;Ryan R. Wick;David J. Edwards

  572
  Citations

• Identification of Klebsiella capsule synthesis loci from whole genome data.

  Kelly L. Wyres;Ryan R. Wick;Claire Gorrie;Adam Jenney

  553
  Citations

• Trycycler: consensus long-read assemblies for bacterial genomes

  Ryan R. Wick;Louise M. Judd;Louise T. Cerdeira;Jane Hawkey

  527
  Citations

• Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae.

  Kelly L. Wyres;Ryan R. Wick;Louise M. Judd;Roni Froumine

  344
  Citations

• Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

  Margaret M. C. Lam;Ryan R. Wick;Kelly L. Wyres;Claire L. Gorrie

  317
  Citations

• Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination

  Margaret M.C. Lam;Kelly L. Wyres;Sebastian Duchêne;Ryan R. Wick

  305
  Citations

• Benchmarking of long-read assemblers for prokaryote whole genome sequencing

  Ryan R. Wick;Kathryn E. Holt;Kathryn E. Holt

  293
  Citations

• Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes

  Ryan R. Wick;Eva Heinz;Kathryn E. Holt;Kelly L. Wyres

  284
  Citations

• Kaptive 2.0: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex

  Unknown

  279
  Citations

• Benchmarking of long-read assemblers for prokaryote whole genome sequencing

  Unknown

  242
  Citations

• Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

  De Maio N;Shaw Lp;Hubbard A;George S

  240
  Citations

• Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen

  Unknown

  235
  Citations

• Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

  Margaret M. C. Lam;Kelly L. Wyres;Louise M. Judd;Ryan R. Wick

  229
  Citations

• Completing bacterial genome assemblies with multiplex MinION sequencing

  Ryan R. Wick;Louise M. Judd;Claire L. Gorrie;Kathryn E. Holt

  188
  Citations

• Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

  Ryan R. Wick;Louise M. Judd;Claire L. Gorrie;Kathryn E. Holt

  173
  Citations