World's Best Scientists 2026 revealed!

D-Index & Metrics

Computer Science

D-Index
39
Citations
12201
World Ranking
9515
National Ranking
470

Overview

Theodore Alexandrov is affiliated with the European Molecular Biology Laboratory in Germany and has a research profile characterized by contributions to biochemistry, genetics, and molecular biology. Their work spans diverse fields and includes a significant number of publications in molecular biology, environmental chemistry, spectroscopy, geophysics, and nephrology.

Alexandrov's research topics cover a range of scientific areas such as methane hydrates and related phenomena, metabolomics and mass spectrometry studies, earthquake detection and analysis, mass spectrometry techniques and applications, single-cell and spatial transcriptomics, advanced proteomics techniques and applications, and chronic kidney disease and diabetes.

Frequent publication venues associated with their work include:

  • OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • Kidney International
  • Molecular Systems Biology

Among recent papers, notable titles include:

  • "Feature-based molecular networking in the GNPS analysis environment," 2020, Nature Methods
  • "An atlas of healthy and injured cell states and niches in the human kidney," 2023, Nature
  • "Critical Role of Type III Interferon in Controlling SARS-CoV-2 Infection in Human Intestinal Epithelial Cells," 2020, Cell Reports
  • "SpaceM reveals metabolic states of single cells," 2021, Nature Methods
  • "SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids," 2021, Cell Stem Cell

Frequent co-authors who have collaborated extensively with Alexandrov are:

  • Christopher Anderton
  • Kumar Sharma
  • Guanshi Zhang
  • Ljiljana Paša-Tolić
  • Jessica Lukowski

Best Publications

  • Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

    Mingxun Wang;Jeremy J Carver;Vanessa V Phelan;Laura M Sanchez

  • Feature-based molecular networking in the GNPS analysis environment.

    Louis-Félix Nothias;Louis-Félix Nothias;Daniel Petras;Daniel Petras;Robin Schmid;Kai Dührkop

  • Mass spectral molecular networking of living microbial colonies

    Jeramie D. Watrous;Patrick J. Roach;Theodore Alexandrov;Theodore Alexandrov;Brandi S. Heath

  • FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry

    Andrew Palmer;Prasad Phapale;Ilya Chernyavsky;Regis Lavigne;Regis Lavigne

  • Molecular cartography of the human skin surface in 3D

    Amina Bouslimani;Carla Renata Correa Porto;Christopher M Rath;Mingxun Wang

  • Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation

    Louis-Félix Nothias;Louis-Félix Nothias;Louis-Félix Nothias;Mélissa Nothias-Esposito;Mélissa Nothias-Esposito;Ricardo da Silva;Ricardo da Silva;Mingxun Wang;Mingxun Wang

  • MALDI imaging mass spectrometry: statistical data analysis and current computational challenges

    Theodore Alexandrov;Theodore Alexandrov

  • Spatial Metabolomics and Imaging Mass Spectrometry in the Age of Artificial Intelligence

    Theodore Alexandrov

  • Spatial Segmentation of Imaging Mass Spectrometry Data with Edge-Preserving Image Denoising and Clustering

    Theodore Alexandrov;Michael Becker;Sören-Oliver Deininger;Günther Ernst

  • Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states.

    Sergio Triana;Dominik Vonficht;Dominik Vonficht;Lea Jopp-Saile;Simon Raffel

  • A Review of Some Modern Approaches to the Problem of Trend Extraction

    Theodore Alexandrov;Silvia Bianconcini;Estela Bee Dagum;Peter Maass

  • Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering

    Theodore Alexandrov;Jan Hendrik Kobarg

  • The evolving field of imaging mass spectrometry and its impact on future biological research

    Jeramie D. Watrous;Theodore Alexandrov;Pieter C. Dorrestein

  • Exploring three-dimensional matrix-assisted laser desorption/ionization imaging mass spectrometry data: three-dimensional spatial segmentation of mouse kidney.

    Dennis Trede;Stefan Schiffler;Michael Becker;Stefan Wirtz

  • Feature-based Molecular Networking in the GNPS Analysis Environment

    Louis Felix Nothias;Daniel Petras;Robin Schmid;Kai Dührkop

  • 3D molecular cartography using LC-MS facilitated by Optimus and 'ili software.

    Ivan Protsyuk;Alexey V Melnik;Louis-Felix Nothias;Luca Rappez

  • Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation

    Theodore Alexandrov;Jens Decker;Bart Mertens;Andre M. Deelder

  • Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples

    Alexey V. Melnik;Ricardo R. da Silva;Embriette R. Hyde;Alexander A. Aksenov

  • MALDI-imaging segmentation is a powerful tool for spatial functional proteomic analysis of human larynx carcinoma.

    Theodore Alexandrov;Michael Becker;Orlando Guntinas-Lichius;Günther Ernst

  • METASPACE: A community-populated knowledge base of spatial metabolomes in health and disease

    Alexandrov T;Ovchinnikova K;Palmer A;Kovalev

  • Meta-mass shift chemical profiling of metabolomes from coral reefs

    Aaron C. Hartmann;Aaron C. Hartmann;Daniel Petras;Robert A. Quinn;Ivan Protsyuk

Frequent Co-Authors

Pieter C. Dorrestein
Pieter C. Dorrestein University of California, San Diego
Nuno Bandeira
Nuno Bandeira University of California, San Diego
Steeve Boulant
Steeve Boulant University of Florida
Rob Knight
Rob Knight University of California, San Diego
Peter Maass
Peter Maass University of Bremen
William H. Gerwick
William H. Gerwick University of California, San Diego
Olga G. Troyanskaya
Olga G. Troyanskaya Princeton University
Ravi Iyengar
Ravi Iyengar Icahn School of Medicine at Mount Sinai
Kun Zhang
Kun Zhang University of California, San Diego
Edgar A. Otto
Edgar A. Otto University of Michigan–Ann Arbor

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