D-Index & Metrics Best Publications

D-Index & Metrics

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics and Molecular Biology D-index 119 Citations 54,846 434 World Ranking 194 National Ranking 119

Research.com Recognitions

Awards & Achievements

2012 - Promega Biotechnology Research Award, American Society for Microbiology

2010 - Fellow of the American Association for the Advancement of Science (AAAS)

2006 - Member of the National Academy of Engineering For scholarship, technological advances, and entrepreneurial activities in metabolic engineering.

1996 - Fellow of the Indian National Academy of Engineering (INAE)


What is he best known for?

The fields of study he is best known for:

  • Gene
  • Enzyme
  • DNA

His scientific interests lie mostly in Genetics, Computational biology, Metabolic network, In silico and Gene. His studies in Genome, Escherichia coli, Phenotype, Organism and Regulation of gene expression are all subfields of Genetics research. His biological study focuses on Systems biology.

His work is dedicated to discovering how Systems biology, Biological network are connected with Theoretical computer science and other disciplines. The various areas that Bernhard O. Palsson examines in his Metabolic network study include Biomass, Metabolic network modelling, Identification and Metabolism. His studies in Metabolic network modelling integrate themes in fields like Flux balance analysis, Fluxomics and Constraint.

His most cited work include:

  • What is flux balance analysis (2214 citations)
  • Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 (1589 citations)
  • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. (1227 citations)

What are the main themes of his work throughout his whole career to date?

Computational biology, Gene, Genetics, Systems biology and Genome are his primary areas of study. His study of Metabolic network is a part of Computational biology. His Metabolic network research integrates issues from Flux, Flux balance analysis, Metabolic network modelling and Metabolism.

Bernhard O. Palsson does research in Genetics, focusing on Gene expression profiling specifically. His Systems biology study results in a more complete grasp of Bioinformatics. His specific area of interest is Genome, where Bernhard O. Palsson studies Genomics.

He most often published in these fields:

  • Computational biology (43.17%)
  • Gene (26.50%)
  • Genetics (22.77%)

What were the highlights of his more recent work (between 2018-2021)?

  • Computational biology (43.17%)
  • Gene (26.50%)
  • Genome (22.15%)

In recent papers he was focusing on the following fields of study:

Bernhard O. Palsson mainly investigates Computational biology, Gene, Genome, Escherichia coli and Gene expression. His Computational biology research is multidisciplinary, incorporating perspectives in Proteome, Transcriptome, Function, Genome scale and Streptomyces. His research in Proteome intersects with topics in Biological system and Systems biology.

Gene is a primary field of his research addressed under Genetics. He has included themes like Synthetic biology, In silico, Secondary metabolite and DNA sequencing in his Genome study. His work in Gene expression addresses issues such as Metabolism, which are connected to fields such as Amino acid, Metabolic network and Enzyme.

Between 2018 and 2021, his most popular works were:

  • Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0 (297 citations)
  • Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0 (297 citations)
  • A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action (72 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • Enzyme
  • DNA

Bernhard O. Palsson spends much of his time researching Computational biology, Gene, Genome, Systems biology and Genome scale. His Computational biology study integrates concerns from other disciplines, such as Metabolic Model, Proteomics, Enzyme kinetics, Gene knockout and In vivo. His studies examine the connections between Gene and genetics, as well as such issues in Function, with regards to Transcription factor, CCPA, Virulence and Staphylococcus aureus.

His research integrates issues of Phenotype, Synthetic biology, In silico, Workflow and Streptomyces in his study of Genome. His Systems biology research includes themes of Proteome, Biological system, Substrate, Interoperability and Software. His study on Escherichia coli is covered under Genetics.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

What is flux balance analysis

Jeffrey D Orth;Ines Thiele;Bernhard Ø Palsson.
Nature Biotechnology (2010)

3568 Citations

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

Adam M Feist;Christopher S Henry;Jennifer L Reed;Markus Krummenacker.
Molecular Systems Biology (2007)

1597 Citations

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Jan Schellenberger;Richard Que;Ronan M T Fleming;Ines Thiele.
Nature Protocols (2007)

1589 Citations

A protocol for generating a high-quality genome-scale metabolic reconstruction.

Ines Thiele;Bernhard Ø Palsson.
Nature Protocols (2010)

1518 Citations

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Natalie C. Duarte;Scott A. Becker;Neema Jamshidi;Ines Thiele.
Proceedings of the National Academy of Sciences of the United States of America (2007)

1467 Citations

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Mingxun Wang;Jeremy J Carver;Vanessa V Phelan;Laura M Sanchez.
Nature Biotechnology (2016)

1318 Citations

Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network

Jochen Förster;Iman Famili;Patrick Fu;Bernhard Ø. Palsson.
Genome Research (2003)

1279 Citations

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Jennifer L Reed;Thuy D Vo;Christophe H Schilling;Bernhard O Palsson.
Genome Biology (2003)

1236 Citations

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

Jeremy S. Edwards;Jeremy S. Edwards;Rafael U. Ibarra;Bernhard O. Palsson.
Nature Biotechnology (2001)

1200 Citations

Genome-scale models of microbial cells: evaluating the consequences of constraints

Nathan D. Price;Jennifer L. Reed;Bernhard Ø. Palsson.
Nature Reviews Microbiology (2004)

1172 Citations

Best Scientists Citing Bernhard O. Palsson

Jens Nielsen

Jens Nielsen

Chalmers University of Technology

Publications: 377

Pieter C. Dorrestein

Pieter C. Dorrestein

University of California, San Diego

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Sang Yup Lee

Sang Yup Lee

Korea Advanced Institute of Science and Technology

Publications: 160

Hans V. Westerhoff

Hans V. Westerhoff

Vrije Universiteit Amsterdam

Publications: 140

Dong-Yup Lee

Dong-Yup Lee

Sungkyunkwan University

Publications: 137

Andreas Wagner

Andreas Wagner

University of Zurich

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Costas D. Maranas

Costas D. Maranas

Pennsylvania State University

Publications: 119

Uwe Sauer

Uwe Sauer

ETH Zurich

Publications: 107

Douglas B. Kell

Douglas B. Kell

University of Liverpool

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Zoran Nikoloski

Zoran Nikoloski

University of Potsdam

Publications: 97

Nathan E. Lewis

Nathan E. Lewis

University of California, San Diego

Publications: 96

Ines Thiele

Ines Thiele

National University of Ireland, Galway

Publications: 95

Vassily Hatzimanikatis

Vassily Hatzimanikatis

École Polytechnique Fédérale de Lausanne

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Eytan Ruppin

Eytan Ruppin

National Institutes of Health

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Lars K. Nielsen

Lars K. Nielsen

University of Queensland

Publications: 88

Jason A. Papin

Jason A. Papin

University of Virginia

Publications: 87

Profile was last updated on December 6th, 2021.
Research.com Ranking is based on data retrieved from the Microsoft Academic Graph (MAG).
The ranking d-index is inferred from publications deemed to belong to the considered discipline.

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