2026 Mark A. Musen: Computer Science Researcher – H-Index, Publications & Awards

Discipline name	D-Index	World Ranking	Current World Ranking	National Ranking	Current National Ranking	Publications	Citations
Computer Science	101	351	340	193	186	597	44990

Research.com Recognitions

2016 - Member of the National Academy of Medicine (NAM)
Member of the Association of American Physicians
Member of the Association of American Physicians
Member of the Association of American Physicians

Overview

Mark A. Musen is affiliated with Stanford University in the United States. Their research primarily spans the fields of Computer Science and Biochemistry, Genetics, and Molecular Biology. With a focus on subfields including Molecular Biology, Artificial Intelligence, Information Systems, Information Systems and Management, and Health Information Management, their work integrates diverse domains within biomedical and computational sciences.

The scientist's research topics cover various aspects of biomedical text mining and ontologies, semantic web and ontologies, research data management practices, scientific computing and data management, data quality and management, bioinformatics and genomic networks, and electronic health records systems.

Biomedical Text Mining and Ontologies
Semantic Web and Ontologies
Research Data Management Practices
Scientific Computing and Data Management
Data Quality and Management
Bioinformatics and Genomic Networks
Electronic Health Records Systems

Mark A. Musen has contributed to a number of publications, including recent papers such as:

The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information, 2023, Bioinformatics
Design of a FAIR digital data health infrastructure in Africa for COVID-19 reporting and research, 2021, Advanced Genetics
Modeling community standards for metadata as templates makes data FAIR, 2022, Scientific Data
Without appropriate metadata, data-sharing mandates are pointless, 2022, Nature
Obstacles to the reuse of study metadata in ClinicalTrials.gov, 2020, Scientific Data

Frequent co-authors of Mark A. Musen include Josef Hardi, Katy Börner, Ellen M. Quardokus, Marcos Martínez-Romero, and Bruce W. Herr.

Josef Hardi
Katy Börner
Ellen M. Quardokus
Marcos Martínez-Romero
Bruce W. Herr

Mark A. Musen's publications commonly appear in venues such as arXiv (Cornell University), Scientific Data, bioRxiv (Cold Spring Harbor Laboratory), Zenodo (CERN European Organization for Nuclear Research), and the Journal of the American Medical Informatics Association.

arXiv (Cornell University)
Scientific Data
bioRxiv (Cold Spring Harbor Laboratory)
Zenodo (CERN European Organization for Nuclear Research)
Journal of the American Medical Informatics Association

Among distinctions, Mark A. Musen was named a Member of the National Academy of Medicine in 2016 and is also a member of the Association of American Physicians. These awards underscore recognition within the medical and scientific communities.

Best Publications

The evolution of Protégé: an environment for knowledge-based systems development

John H. Gennari;Mark A. Musen;Ray W. Fergerson;William E. Grosso

1744
Citations
Algorithm and Tool for Automated Ontology Merging and Alignment

Natalya Fridman Noy;Mark A. Musen

1699
Citations
The protégé project: a look back and a look forward

Mark A. Musen

1636
Citations
Creating Semantic Web contents with Protege-2000

N.F. Noy;M. Sintek;S. Decker;M. Crubezy

1614
Citations
PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment

Natalya Fridman Noy;Mark A. Musen

1461
Citations
The protégé OWL plugin: an open development environment for semantic web applications

Holger Knublauch;Ray W. Fergerson;Natalya F. Noy;Mark A. Musen

1439
Citations
Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease

Kaustubh Supekar;Vinod Menon;Daniel J Rubin;Mark A. Musen

1414
Citations
The Knowledge Model of Protégé-2000: Combining Interoperability and Flexibility

Natalya Fridman Noy;Ray W. Fergerson;Mark A. Musen

1206
Citations
The PROMPT suite: interactive tools for ontology merging and mapping

Natalya F. Noy;Mark A. Musen

1131
Citations
BioPortal: ontologies and integrated data resources at the click of a mouse

Natalya Fridman Noy;Nigam H. Shah;Patricia L. Whetzel;Benjamin Dai

1127
Citations
Handbook of Medical Informatics

Jan H. van Bemmel;Mark A. Musen

1004
Citations
Development of Large-Scale Functional Brain Networks in Children

Kaustubh Supekar;Mark A. Musen;Vinod Menon

984
Citations
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

Patricia L. Whetzel;Natalya Fridman Noy;Nigam H. Shah;Paul R. Alexander

950
Citations
Anchor-PROMPT: Using Non-Local Context for Semantic Matching.

Natalya Fridman Noy;Mark A. Musen

690
Citations
Dimensions of knowledge sharing and reuse

Mark A. Musen

585
Citations
The Semantic Web – ISWC 2005

Yolanda Gil;Enrico Motta;V. Richard Benjamins;Mark A. Musen

543
Citations
EON: A Component-Based Approach to Automation of Protocol-Directed Therapy

Mark A. Musen;Samson W. Tu;Amar K. Das;Yuval Shahar

522
Citations
Toward a science of learning systems: a research agenda for the high-functioning Learning Health System

Charles P. Friedman;Joshua C. Rubin;Jeffrey S. Brown;Melinda Buntin

504
Citations
Breast cancer on the world wide web: cross sectional survey of quality of information and popularity of websites

Funda Meric;Elmer V Bernstam;Nadeem Q Mirza;Kelly K Hunt

449
Citations
Knowledge modeling at the millennium : The design and evolution of Protégé-2000

William Grosso;Henrik Eriksson;Ray Fergerson;John Gennari

439
Citations
PROMPT: Algorithm and Tool for Automated Ontology Merging and

Natalya Fridman Noy;Mark A. Musen

21
Citations
BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse

Patricia L. Whetzel;Nigam H. Shah;Natalya F. Noy;Benjamin Dai

11
Citations
The Semantic Web - ISWC 2005: 4th International Semantic Web Conference, ISWC 2005, Galway, Ireland, November 6 - 10, 2005, Proceedings (Lecture Notes in Computer Science)

Yolanda Gil;Enrico Motta;V. Richard Benjamins;Mark Musen

6
Citations

Frequent Co-Authors

Samson W. Tu Stanford University

Natalya F. Noy Google (United States)

Nigam H. Shah Stanford University

Yuval Shahar Ben-Gurion University of the Negev

Daniel L. Rubin Stanford University

John H. Gennari University of Washington

Edward H. Shortliffe Columbia University

Rudi Studer Karlsruhe Institute of Technology

Barry Smith University at Buffalo, State University of New York

Russ B. Altman Stanford University

External Links

Personal website of Mark A. Musen Google Scholar page

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