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Shoji Takada

Shoji Takada

Kyoto University
Japan

D-Index & Metrics

Discipline name D-Index World Ranking Current World Ranking National Ranking Current National Ranking Publications Citations
Biology and Biochemistry 48 18341 16838 1318 1225 287 9033

Shoji Takada publications per year

The chart shows the history of publications by Shoji Takada between 1992 and 2026, highlighting the no. of papers published in each year and offering an overview of the publication velocity of this scholar. Shoji Takada published across 35 years, from 1992 to 2026, averaging 10.5 papers a year. Output peaked at 29 publications in 2013. 23 of the 368 publications appeared in the last two years.

No. of publications
5 10 15 20 25
Bar chart. Horizontal axis: year, 1992 to 2026. Vertical axis: number of publications, 0 to 29. Peak 29 publications in 2013. 1992: 1 publication 1993: 0 publications 1994: 4 publications 1995: 2 publications 1996: 1 publication 1997: 5 publications 1998: 1 publication 1999: 3 publications 2000: 6 publications 2001: 11 publications 2002: 8 publications 2003: 12 publications 2004: 13 publications 2005: 10 publications 2006: 7 publications 2007: 6 publications 2008: 16 publications 2009: 21 publications 2010: 22 publications 2011: 18 publications 2012: 28 publications 2013: 29 publications 2014: 25 publications 2015: 11 publications 2016: 4 publications 2017: 7 publications 2018: 7 publications 2019: 5 publications 2020: 11 publications 2021: 20 publications 2022: 10 publications 2023: 10 publications 2024: 11 publications 2025: 22 publications 2026: 1 publication
1992 2026

368 publications in total across all disciplines

View publications per year as a table
Shoji Takada: publications per year, 1992 to 2026
Year Publications
1992 1
1993 0
1994 4
1995 2
1996 1
1997 5
1998 1
1999 3
2000 6
2001 11
2002 8
2003 12
2004 13
2005 10
2006 7
2007 6
2008 16
2009 21
2010 22
2011 18
2012 28
2013 29
2014 25
2015 11
2016 4
2017 7
2018 7
2019 5
2020 11
2021 20
2022 10
2023 10
2024 11
2025 22
2026 1
Total 368
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Shoji Takada publication distribution in Biology and Biochemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Biology and Biochemistry in 2026. The highlighted bar marks where Shoji Takada sits on this spectrum.

No. of scientists
200 400 600 800
Bar chart with 100 bars. Horizontal axis: publications, 47–56 to 1,028+. Vertical axis: number of scientists, 0 to 980. Most scientists, 980, have 127–136 publications. The last bar groups every scientist with 1,028 publications or more. The highlighted bar, 287–296 publications, is where this scientist sits. 47–56 publications: 8 scientists 57–66 publications: 35 scientists 67–76 publications: 106 scientists 77–86 publications: 231 scientists 87–96 publications: 413 scientists 97–106 publications: 546 scientists 107–116 publications: 704 scientists 117–126 publications: 848 scientists 127–136 publications: 980 scientists 137–146 publications: 942 scientists 147–156 publications: 969 scientists 157–166 publications: 949 scientists 167–176 publications: 951 scientists 177–186 publications: 915 scientists 187–196 publications: 787 scientists 197–206 publications: 840 scientists 207–216 publications: 733 scientists 217–226 publications: 708 scientists 227–236 publications: 651 scientists 237–246 publications: 605 scientists 247–256 publications: 510 scientists 257–266 publications: 524 scientists 267–276 publications: 434 scientists 277–286 publications: 417 scientists 287–296 publications: 350 scientists 297–306 publications: 363 scientists 307–316 publications: 315 scientists 317–326 publications: 296 scientists 327–336 publications: 261 scientists 337–346 publications: 240 scientists 347–356 publications: 219 scientists 357–366 publications: 196 scientists 367–376 publications: 154 scientists 377–386 publications: 161 scientists 387–396 publications: 155 scientists 397–406 publications: 145 scientists 407–416 publications: 124 scientists 417–426 publications: 112 scientists 427–436 publications: 132 scientists 437–446 publications: 116 scientists 447–456 publications: 99 scientists 457–466 publications: 81 scientists 467–476 publications: 91 scientists 477–486 publications: 80 scientists 487–496 publications: 80 scientists 497–506 publications: 59 scientists 507–516 publications: 36 scientists 517–526 publications: 46 scientists 527–536 publications: 54 scientists 537–546 publications: 44 scientists 547–556 publications: 43 scientists 557–566 publications: 43 scientists 567–576 publications: 42 scientists 577–586 publications: 25 scientists 587–596 publications: 34 scientists 597–606 publications: 23 scientists 607–616 publications: 33 scientists 617–626 publications: 31 scientists 627–636 publications: 27 scientists 637–646 publications: 25 scientists 647–656 publications: 28 scientists 657–666 publications: 34 scientists 667–676 publications: 18 scientists 677–686 publications: 16 scientists 687–696 publications: 10 scientists 697–706 publications: 12 scientists 707–716 publications: 21 scientists 717–726 publications: 12 scientists 727–736 publications: 12 scientists 737–746 publications: 10 scientists 747–756 publications: 7 scientists 757–766 publications: 13 scientists 767–776 publications: 15 scientists 777–786 publications: 13 scientists 787–796 publications: 9 scientists 797–806 publications: 9 scientists 807–816 publications: 7 scientists 817–826 publications: 4 scientists 827–836 publications: 9 scientists 837–846 publications: 7 scientists 847–856 publications: 3 scientists 857–866 publications: 5 scientists 867–876 publications: 5 scientists 877–886 publications: 11 scientists 887–896 publications: 3 scientists 897–906 publications: 4 scientists 907–916 publications: 7 scientists 917–926 publications: 5 scientists 927–936 publications: 6 scientists 937–946 publications: 6 scientists 947–956 publications: 3 scientists 957–966 publications: 7 scientists 967–976 publications: 2 scientists 977–986 publications: 2 scientists 987–996 publications: 1 scientist 997–1,006 publications: 5 scientists 1,007–1,016 publications: 2 scientists 1,017–1,026 publications: 2 scientists 1,027 publications: 1 scientist 1,028+ publications: 100 scientists
47–56 publications 1,028+

This scientist: 287 publications — 76th percentile

76% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,028 publications or more.

View publications distribution as a table
Number of Biology and Biochemistry scientists by publication count, Research.com 2026 ranking edition. Based on 19,587 ranked scientists.
Publications Scientists This scientist
47–56 8
57–66 35
67–76 106
77–86 231
87–96 413
97–106 546
107–116 704
117–126 848
127–136 980
137–146 942
147–156 969
157–166 949
167–176 951
177–186 915
187–196 787
197–206 840
207–216 733
217–226 708
227–236 651
237–246 605
247–256 510
257–266 524
267–276 434
277–286 417
287–296 350 287
297–306 363
307–316 315
317–326 296
327–336 261
337–346 240
347–356 219
357–366 196
367–376 154
377–386 161
387–396 155
397–406 145
407–416 124
417–426 112
427–436 132
437–446 116
447–456 99
457–466 81
467–476 91
477–486 80
487–496 80
497–506 59
507–516 36
517–526 46
527–536 54
537–546 44
547–556 43
557–566 43
567–576 42
577–586 25
587–596 34
597–606 23
607–616 33
617–626 31
627–636 27
637–646 25
647–656 28
657–666 34
667–676 18
677–686 16
687–696 10
697–706 12
707–716 21
717–726 12
727–736 12
737–746 10
747–756 7
757–766 13
767–776 15
777–786 13
787–796 9
797–806 9
807–816 7
817–826 4
827–836 9
837–846 7
847–856 3
857–866 5
867–876 5
877–886 11
887–896 3
897–906 4
907–916 7
917–926 5
927–936 6
937–946 6
947–956 3
957–966 7
967–976 2
977–986 2
987–996 1
997–1,006 5
1,007–1,016 2
1,017–1,026 2
1,027 1
1,028+ 100
Download as CSV

Shoji Takada D-index placement in Biology and Biochemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Biology and Biochemistry scientists ranked by Research.com in 2026. The highlighted bar marks where Shoji Takada sits on this spectrum.

No. of scientists
250 500 750 1,000 1,250
Bar chart with 65 bars. Horizontal axis: D-Index, 40–41 to 167+. Vertical axis: number of scientists, 0 to 1,253. Most scientists, 1,253, have 58–59 D-Index. The last bar groups every scientist with 167 D-Index or more. The highlighted bar, 48–49 D-Index, is where this scientist sits. 40–41 D-Index: 80 scientists 42–43 D-Index: 183 scientists 44–45 D-Index: 316 scientists 46–47 D-Index: 504 scientists 48–49 D-Index: 718 scientists 50–51 D-Index: 899 scientists 52–53 D-Index: 1,025 scientists 54–55 D-Index: 1,149 scientists 56–57 D-Index: 1,235 scientists 58–59 D-Index: 1,253 scientists 60–61 D-Index: 1,162 scientists 62–63 D-Index: 1,130 scientists 64–65 D-Index: 1,031 scientists 66–67 D-Index: 897 scientists 68–69 D-Index: 814 scientists 70–71 D-Index: 714 scientists 72–73 D-Index: 709 scientists 74–75 D-Index: 596 scientists 76–77 D-Index: 512 scientists 78–79 D-Index: 473 scientists 80–81 D-Index: 412 scientists 82–83 D-Index: 373 scientists 84–85 D-Index: 358 scientists 86–87 D-Index: 285 scientists 88–89 D-Index: 273 scientists 90–91 D-Index: 227 scientists 92–93 D-Index: 208 scientists 94–95 D-Index: 193 scientists 96–97 D-Index: 153 scientists 98–99 D-Index: 157 scientists 100–101 D-Index: 148 scientists 102–103 D-Index: 120 scientists 104–105 D-Index: 113 scientists 106–107 D-Index: 100 scientists 108–109 D-Index: 86 scientists 110–111 D-Index: 67 scientists 112–113 D-Index: 71 scientists 114–115 D-Index: 73 scientists 116–117 D-Index: 64 scientists 118–119 D-Index: 53 scientists 120–121 D-Index: 60 scientists 122–123 D-Index: 54 scientists 124–125 D-Index: 43 scientists 126–127 D-Index: 38 scientists 128–129 D-Index: 49 scientists 130–131 D-Index: 26 scientists 132–133 D-Index: 18 scientists 134–135 D-Index: 23 scientists 136–137 D-Index: 32 scientists 138–139 D-Index: 32 scientists 140–141 D-Index: 27 scientists 142–143 D-Index: 19 scientists 144–145 D-Index: 22 scientists 146–147 D-Index: 12 scientists 148–149 D-Index: 16 scientists 150–151 D-Index: 14 scientists 152–153 D-Index: 10 scientists 154–155 D-Index: 13 scientists 156–157 D-Index: 10 scientists 158–159 D-Index: 7 scientists 160–161 D-Index: 9 scientists 162–163 D-Index: 13 scientists 164–165 D-Index: 4 scientists 166 D-Index: 4 scientists 167+ D-Index: 98 scientists
40–41 D-Index 167+

This scientist: 48 D-Index — 7th percentile

7% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 167 D-Index or more.

View D-Index distribution as a table
Number of Biology and Biochemistry scientists by D-index, Research.com 2026 ranking edition. Based on 19,587 ranked scientists.
D-Index Scientists This scientist
40–41 80
42–43 183
44–45 316
46–47 504
48–49 718 48
50–51 899
52–53 1,025
54–55 1,149
56–57 1,235
58–59 1,253
60–61 1,162
62–63 1,130
64–65 1,031
66–67 897
68–69 814
70–71 714
72–73 709
74–75 596
76–77 512
78–79 473
80–81 412
82–83 373
84–85 358
86–87 285
88–89 273
90–91 227
92–93 208
94–95 193
96–97 153
98–99 157
100–101 148
102–103 120
104–105 113
106–107 100
108–109 86
110–111 67
112–113 71
114–115 73
116–117 64
118–119 53
120–121 60
122–123 54
124–125 43
126–127 38
128–129 49
130–131 26
132–133 18
134–135 23
136–137 32
138–139 32
140–141 27
142–143 19
144–145 22
146–147 12
148–149 16
150–151 14
152–153 10
154–155 13
156–157 10
158–159 7
160–161 9
162–163 13
164–165 4
166 4
167+ 98
Download as CSV

Overview

Shoji Takada is affiliated with Kyoto University in Japan and has an extensive publication record in the field of Biochemistry, Genetics, and Molecular Biology. Their research primarily focuses on Molecular Biology and includes subfields such as Atomic and Molecular Physics and Optics, Cell Biology, Structural Biology, and Genetics.

Takada's work covers a range of scientific topics including:

  • Genomics and Chromatin Dynamics
  • RNA and protein synthesis mechanisms
  • RNA Research and Splicing
  • Force Microscopy Techniques and Applications
  • DNA and Nucleic Acid Chemistry
  • Protein Structure and Dynamics
  • Advanced Electron Microscopy Techniques and Applications

Their recent papers include:

  • "Nucleosome allostery in pioneer transcription factor binding," 2020, Proceedings of the National Academy of Sciences
  • "Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations," 2022, PLoS Computational Biology
  • "Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations," 2020, Journal of Chemical Theory and Computation
  • "Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase FO motor," 2020, Scientific Reports
  • "Role of bacterial RNA polymerase gate opening dynamics in DNA loading and antibiotics inhibition elucidated by quasi-Markov State Model," 2021, Proceedings of the National Academy of Sciences

Takada has collaborated frequently with several researchers including Giovanni B. Brandani, Toru Niina, Cheng Tan, Shintaroh Kubo, and Yuji Sugita. These coauthors have appeared collectively in numerous publications, reflecting ongoing research partnerships.

Their work has been published in a variety of scientific venues. The most frequent publication platforms include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Biophysical Journal
  • PLoS Computational Biology
  • Journal of Chemical Theory and Computation
  • Nucleic Acids Research

Best Publications

  • On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction

    Hiroaki Fukunishi;Osamu Watanabe;Shoji Takada

  • Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

    Nobuyasu Koga;Shoji Takada;Shoji Takada

  • Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms

    Kei-ichi Okazaki;Shoji Takada

  • Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

    Kei-ichi Okazaki;Nobuyasu Koga;Shoji Takada;Jose N. Onuchic

  • Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins

    Tatsuya Niwa;Bei Wen Ying;Bei Wen Ying;Katsuyo Saito;Wenzhen Jin

  • How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: Molecular simulations

    Fumiko Takagi;Nobuyasu Koga;Shoji Takada

  • Coarse-grained molecular simulations of large biomolecules

    Shoji Takada

  • CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work

    Hiroo Kenzaki;Nobuyasu Koga;Naoto Hori;Ryo Kanada

  • Folding dynamics with nonadditive forces: A simulation study of a designed helical protein and a random heteropolymer

    Shoji Takada;Shoji Takada;Zaida Luthey-Schulten;Peter G. Wolynes

  • Microscopic Theory of Protein Folding Rates.II: Local Reaction Coordinates and Chain Dynamics

    John J. Portman;Shoji Takada;Peter G. Wolynes

  • Go-ing for the prediction of protein folding mechanisms.

    Shoji Takada

  • Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains

    Wenfei Li;Wei Wang;Shoji Takada

  • Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins

    Wenfei Li;Peter G. Wolynes;Shoji Takada

  • On easy implementation of a variant of the replica exchange with solute tempering in GROMACS.

    Tsuyoshi Terakawa;Tomoshi Kameda;Shoji Takada

  • Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot

    Wenfei Li;Wenfei Li;Tsuyoshi Terakawa;Wei Wang;Shoji Takada

  • Variational Theory for Site Resolved Protein Folding Free Energy Surfaces

    J. J. Portman;S. Takada;P. G. Wolynes

  • Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations.

    Shoji Takada;Ryo Kanada;Cheng Tan;Tsuyoshi Terakawa

  • Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase.

    Nobuyasu Koga;Shoji Takada

  • Effects of vibrational excitation on multidimensional tunneling: General study and proton tunneling in tropolone

    Shoji Takada;Hiroki Nakamura

  • Optimizing physical energy functions for protein folding.

    Yoshimi Fujitsuka;Shoji Takada;Shoji Takada;Zaida A. Luthey-Schulten;Peter G. Wolynes

Frequent Co-Authors

Peter G. Wolynes
Peter G. Wolynes Rice University
Shun Hirota
Shun Hirota Nara Institute of Science and Technology
Masaru Tanokura
Masaru Tanokura University of Tokyo
Tsutomu Katayama
Tsutomu Katayama Kyushu University
Do Hyun Kim
Do Hyun Kim Korea Advanced Institute of Science and Technology
Reid C. Johnson
Reid C. Johnson University of California, Los Angeles
Hitoshi Kurumizaka
Hitoshi Kurumizaka University of Tokyo
Zaida Luthey-Schulten
Zaida Luthey-Schulten University of Illinois at Urbana-Champaign
Soichi Wakatsuki
Soichi Wakatsuki Stanford University
Shaul Mukamel
Shaul Mukamel University of California, Irvine

External Links

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Best Scientists Citing Shoji Takada

José N. Onuchic

José N. Onuchic

Rice University

Publications: 72

Peter G. Wolynes

Peter G. Wolynes

Rice University

Publications: 64

Jin Wang

Jin Wang

Stony Brook University

Publications: 36

John Z. H. Zhang

John Z. H. Zhang

New York University

Publications: 34

Yuji Sugita

Yuji Sugita

RIKEN Center for Biosystems Dynamics Research

Publications: 31

Tiffany R. Walsh

Tiffany R. Walsh

Deakin University

Publications: 31

Gerhard Hummer

Gerhard Hummer

Max Planck Society

Publications: 27

Hue Sun Chan

Hue Sun Chan

University of Toronto

Publications: 26

Gregory A. Voth

Gregory A. Voth

University of Chicago

Publications: 26

Haruki Nakamura

Haruki Nakamura

Osaka University

Publications: 24

Cecilia Clementi

Cecilia Clementi

Freie Universität Berlin

Publications: 24

Martin Gruebele

Martin Gruebele

University of Illinois at Urbana-Champaign

Publications: 23

Martin Zacharias

Martin Zacharias

Technical University of Munich

Publications: 23

Charles L. Brooks

Charles L. Brooks

University of Michigan–Ann Arbor

Publications: 21

Juan J. de Pablo

Juan J. de Pablo

New York University

Publications: 20

Robert B. Best

Robert B. Best

National Institutes of Health

Publications: 19

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