World's Best Scientists 2026 revealed!

D-Index & Metrics

Chemistry

D-Index
59
Citations
18446
World Ranking
9999
National Ranking
714

Yuji Sugita publication distribution in Chemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Chemistry in 2026. The highlighted bar marks where Yuji Sugita sits on this spectrum.

61–80 publications: 66 scientists 81–100 publications: 302 scientists 101–120 publications: 623 scientists 121–140 publications: 918 scientists 141–160 publications: 1,218 scientists 161–180 publications: 1,350 scientists 181–200 publications: 1,344 scientists 201–220 publications: 1,281 scientists 221–240 publications: 1,216 scientists 241–260 publications: 1,100 scientists 261–280 publications: 979 scientists 281–300 publications: 939 scientists 301–320 publications: 764 scientists 321–340 publications: 643 scientists 341–360 publications: 628 scientists 361–380 publications: 522 scientists 381–400 publications: 459 scientists 401–420 publications: 397 scientists 421–440 publications: 327 scientists 441–460 publications: 270 scientists 461–480 publications: 265 scientists 481–500 publications: 252 scientists 501–520 publications: 201 scientists 521–540 publications: 185 scientists 541–560 publications: 148 scientists 561–580 publications: 148 scientists 581–600 publications: 132 scientists 601–620 publications: 114 scientists 621–640 publications: 104 scientists 641–660 publications: 91 scientists 661–680 publications: 92 scientists 681–700 publications: 73 scientists 701–720 publications: 57 scientists 721–740 publications: 54 scientists 741–760 publications: 67 scientists 761–780 publications: 45 scientists 781–800 publications: 46 scientists 801–820 publications: 39 scientists 821–840 publications: 32 scientists 841–860 publications: 36 scientists 861–880 publications: 29 scientists 881–900 publications: 26 scientists 901–920 publications: 24 scientists 921–940 publications: 14 scientists 941–960 publications: 23 scientists 961–980 publications: 28 scientists 981–1,000 publications: 15 scientists 1,001–1,020 publications: 29 scientists 1,021–1,040 publications: 12 scientists 1,041–1,060 publications: 19 scientists 1,061–1,080 publications: 12 scientists 1,081–1,100 publications: 6 scientists 1,101–1,120 publications: 8 scientists 1,121–1,140 publications: 12 scientists 1,141–1,160 publications: 5 scientists 1,161–1,180 publications: 6 scientists 1,181–1,200 publications: 14 scientists 1,201–1,220 publications: 7 scientists 1,221–1,240 publications: 2 scientists 1,241–1,260 publications: 6 scientists 1,261–1,280 publications: 4 scientists 1,281–1,294 publications: 6 scientists 1,295+ publications: 100 scientists
61 publications 1,295+

This scientist: 337 publications — 71st percentile

71% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,295 publications or more.

Yuji Sugita D-index placement in Chemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Chemistry scientists ranked by Research.com in 2026. The highlighted bar marks where Yuji Sugita sits on this spectrum.

40–41 D-Index: 289 scientists 42–43 D-Index: 612 scientists 44–45 D-Index: 808 scientists 46–47 D-Index: 776 scientists 48–49 D-Index: 835 scientists 50–51 D-Index: 861 scientists 52–53 D-Index: 872 scientists 54–55 D-Index: 933 scientists 56–57 D-Index: 1,051 scientists 58–59 D-Index: 930 scientists 60–61 D-Index: 882 scientists 62–63 D-Index: 834 scientists 64–65 D-Index: 731 scientists 66–67 D-Index: 775 scientists 68–69 D-Index: 683 scientists 70–71 D-Index: 646 scientists 72–73 D-Index: 561 scientists 74–75 D-Index: 501 scientists 76–77 D-Index: 437 scientists 78–79 D-Index: 388 scientists 80–81 D-Index: 354 scientists 82–83 D-Index: 292 scientists 84–85 D-Index: 275 scientists 86–87 D-Index: 254 scientists 88–89 D-Index: 235 scientists 90–91 D-Index: 185 scientists 92–93 D-Index: 192 scientists 94–95 D-Index: 155 scientists 96–97 D-Index: 163 scientists 98–99 D-Index: 125 scientists 100–101 D-Index: 105 scientists 102–103 D-Index: 105 scientists 104–105 D-Index: 112 scientists 106–107 D-Index: 88 scientists 108–109 D-Index: 68 scientists 110–111 D-Index: 69 scientists 112–113 D-Index: 65 scientists 114–115 D-Index: 79 scientists 116–117 D-Index: 61 scientists 118–119 D-Index: 44 scientists 120–121 D-Index: 37 scientists 122–123 D-Index: 40 scientists 124–125 D-Index: 33 scientists 126–127 D-Index: 26 scientists 128–129 D-Index: 34 scientists 130–131 D-Index: 35 scientists 132–133 D-Index: 25 scientists 134–135 D-Index: 27 scientists 136–137 D-Index: 17 scientists 138–139 D-Index: 16 scientists 140–141 D-Index: 20 scientists 142–143 D-Index: 20 scientists 144–145 D-Index: 15 scientists 146–147 D-Index: 9 scientists 148–149 D-Index: 9 scientists 150–151 D-Index: 16 scientists 152–153 D-Index: 11 scientists 154–155 D-Index: 9 scientists 156–157 D-Index: 3 scientists 158 D-Index: 3 scientists 159+ D-Index: 98 scientists
40 D-Index 159+

This scientist: 59 D-Index — 44th percentile

44% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 159 D-Index or more.

Overview

Yuji Sugita is affiliated with the RIKEN Center for Biosystems Dynamics Research in Japan. Their research spans several areas within biochemistry, genetics, and molecular biology, with a particular focus on molecular biology as a key subfield.

The scientist's work covers a range of topics, including:

  • Protein Structure and Dynamics
  • Enzyme Structure and Function
  • Spectroscopy and Quantum Chemical Studies
  • Bacteriophages and microbial interactions
  • RNA Research and Splicing
  • RNA and protein synthesis mechanisms
  • Genomics and Chromatin Dynamics

Yuji Sugita has published in various notable venues, frequently contributing to:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Biophysical Journal
  • Journal of Chemical Information and Modeling
  • The Journal of Chemical Physics
  • Journal of Chemical Theory and Computation

Some recent publications include:

  • "Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion," 2020, Nature Structural & Molecular Biology
  • "CHARMM-GUI Free Energy Calculator for Absolute and Relative Ligand Solvation and Binding Free Energy Simulations," 2020, Journal of Chemical Theory and Computation
  • "Elucidation of interactions regulating conformational stability and dynamics of SARS-CoV-2 S-protein," 2021, Biophysical Journal
  • "New parallel computing algorithm of molecular dynamics for extremely huge scale biological systems," 2020, Journal of Computational Chemistry
  • "The inherent flexibility of receptor binding domains in SARS-CoV-2 spike protein," 2022, eLife

Frequent co-authors collaborating with Yuji Sugita include:

  • Jaewoon Jung
  • Chigusa Kobayashi
  • Suyong Re
  • Cheng Tan
  • Kiyoshi Yagi

Their research integrates computational approaches, such as molecular dynamics, with experimental studies in spectroscopy and biophysics to elucidate functional and structural dynamics of biological macromolecules. This multidisciplinary approach supports investigations into protein behavior, enzyme activity, and the mechanisms underlying RNA and protein synthesis.

Best Publications

  • Replica-exchange molecular dynamics method for protein folding

    Yuji Sugita;Yuko Okamoto

  • Generalized-ensemble algorithms for molecular simulations of biopolymers.

    Ayori Mitsutake;Yuji Sugita;Yuko Okamoto

  • Multidimensional replica-exchange method for free-energy calculations

    Yuji Sugita;Akio Kitao;Yuko Okamoto

  • Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion

    Kazuaki Matoba;Tetsuya Kotani;Akihisa Tsutsumi;Takuma Tsuji

  • Replica-exchange multicanonical algorithm and multicanonical replica-exchange method for simulating systems with rough energy landscape

    Yuji Sugita;Yuko Okamoto

  • Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm

    Isseki Yu;Takaharu Mori;Tadashi Ando;Ryuhei Harada

  • Structural role of countertransport revealed in Ca(2+) pump crystal structure in the absence of Ca(2+).

    Koji Obara;Naoyuki Miyashita;Cheng Xu;Itaru Toyoshima

  • Crystal structure of α5β1 integrin ectodomain: Atomic details of the fibronectin receptor

    Masamichi Nagae;Suyong Re;Emiko Mihara;Terukazu Nogi

  • Structural basis of Sec-independent membrane protein insertion by YidC

    Kaoru Kumazaki;Shinobu Chiba;Mizuki Takemoto;Arata Furukawa

  • Conformational transition of Sec machinery inferred from bacterial SecYE structures

    Tomoya Tsukazaki;Hiroyuki Mori;Shuya Fukai;Shuya Fukai;Ryuichiro Ishitani

  • Modeling of the inhibitory interaction of phospholamban with the Ca2+ ATPase

    Chikashi Toyoshima;Michio Asahi;Yuji Sugita;Reena Khanna

  • Protein Crowding Affects Hydration Structure and Dynamics

    Ryuhei Harada;Yuji Sugita;Michael Feig;Michael Feig

  • GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations

    Jaewoon Jung;Takaharu Mori;Chigusa Kobayashi;Yasuhiro Matsunaga

  • Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT

    Shintaro Doki;Hideaki E. Kato;Nicolae Solcan;Masayo Iwaki

  • GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms.

    Chigusa Kobayashi;Jaewoon Jung;Yasuhiro Matsunaga;Takaharu Mori

  • Comparisons of force fields for proteins by generalized-ensemble simulations

    Takao Yoda;Yuji Sugita;Yuko Okamoto

  • Crowding in Cellular Environments at an Atomistic Level from Computer Simulations.

    Michael Feig;Isseki Yu;Po Hung Wang;Grzegorz Nawrocki

  • Sarcolipin regulates sarco(endo)plasmic reticulum Ca2+-ATPase (SERCA) by binding to transmembrane helices alone or in association with phospholamban

    Michio Asahi;Yuji Sugita;Kazimierz Kurzydlowski;Stella De Leon

  • Replica-exchange multicanonical and multicanonical replica-exchange Monte Carlo simulations of peptides. I. Formulation and benchmark test

    Ayori Mitsutake;Yuji Sugita;Yuji Sugita;Yuji Sugita;Yuko Okamoto;Yuko Okamoto

  • Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms.

    Takaharu Mori;Naoyuki Miyashita;Wonpil Im;Michael Feig

  • Structural basis of ion pumping by Ca2+-ATPase of sarcoplasmic reticulum

    Chikashi Toyoshima;Hiromi Nomura;Yuji Sugita

Frequent Co-Authors

Michael Feig
Michael Feig Michigan State University
Hirohisa Saito
Hirohisa Saito Juntendo University
Osamu Nureki
Osamu Nureki University of Tokyo
Ryuichiro Ishitani
Ryuichiro Ishitani University of Tokyo
Chikashi Toyoshima
Chikashi Toyoshima University of Tokyo
Yoshiki Yamaguchi
Yoshiki Yamaguchi Tohoku Medical and Pharmaceutical University
Daisuke Kohda
Daisuke Kohda Kyushu University
Masahiro Kinoshita
Masahiro Kinoshita Kyoto University
Toshihide Kobayashi
Toshihide Kobayashi University of Strasbourg
Gozoh Tsujimoto
Gozoh Tsujimoto Kyoto University

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