D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Biology and Biochemistry D-index 68 Citations 11,967 327 World Ranking 5075 National Ranking 364

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • Enzyme
  • DNA

Martin Zacharias focuses on Docking, Crystallography, Searching the conformational space for docking, Computational biology and Molecular dynamics. Martin Zacharias has included themes like Plasma protein binding, DNA, Molecule, Protein structure and αb crystallin in his Crystallography study. His Protein structure research includes elements of Biophysics, Binding site, Peptide binding, In silico and Peptide.

His Searching the conformational space for docking study combines topics in areas such as Side chain, Energy minimization and Protein–ligand docking. His Computational biology research integrates issues from Genetics and Bioinformatics. His Molecular dynamics study incorporates themes from Chemical physics, Molecular physics, Base pair and Förster resonance energy transfer.

His most cited work include:

  • Separation‐shifted scaling, a new scaling method for Lennard‐Jones interactions in thermodynamic integration (352 citations)
  • Protein–protein docking with a reduced protein model accounting for side-chain flexibility (248 citations)
  • A family of macrodomain proteins reverses cellular mono-ADP-ribosylation (197 citations)

What are the main themes of his work throughout his whole career to date?

His primary scientific interests are in Molecular dynamics, Biophysics, Docking, Crystallography and Binding site. Martin Zacharias interconnects Chemical physics, Molecule and Peptide in the investigation of issues within Molecular dynamics. His study focuses on the intersection of Biophysics and fields such as DNA with connections in the field of Guanine.

His Docking research includes elements of Protein structure and Computational biology. The study incorporates disciplines such as Dihedral angle, Plasma protein binding, RNA, Folding and Umbrella sampling in addition to Crystallography. Martin Zacharias interconnects Stereochemistry and Ligand in the investigation of issues within Binding site.

He most often published in these fields:

  • Molecular dynamics (32.74%)
  • Biophysics (22.62%)
  • Docking (21.73%)

What were the highlights of his more recent work (between 2018-2021)?

  • Molecular dynamics (32.74%)
  • Biophysics (22.62%)
  • Cell biology (7.14%)

In recent papers he was focusing on the following fields of study:

Martin Zacharias mainly investigates Molecular dynamics, Biophysics, Cell biology, DNA and Peptide. He has researched Molecular dynamics in several fields, including Chemical physics, Docking, Biological system, Dissociation and Binding site. In his work, Computational science is strongly intertwined with A protein, which is a subfield of Docking.

Martin Zacharias combines subjects such as Computational biology, Van der Waals radius and Intermolecular force with his study of Binding site. His study in Biophysics is interdisciplinary in nature, drawing from both Active site, Wild type, Molecule, Substrate and Transmembrane domain. His Peptide study integrates concerns from other disciplines, such as Amino acid, MHC class I and T-cell receptor.

Between 2018 and 2021, his most popular works were:

  • NWChem: Past, present, and future (63 citations)
  • NWChem: Past, Present, and Future (49 citations)
  • The Architecture of Talin1 Reveals an Autoinhibition Mechanism (34 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • Enzyme
  • DNA

Martin Zacharias mainly focuses on Biophysics, Protein subunit, Cell biology, Molecular dynamics and Stereochemistry. His Biophysics research incorporates themes from Heat shock protein, Chaperone, Oligomer, Nuclear magnetic resonance spectroscopy and Transmembrane domain. He works mostly in the field of Transmembrane domain, limiting it down to topics relating to Substrate and, in certain cases, Peptide.

He has included themes like Interleukin 27, Secretion, Biogenesis and Folding in his Cell biology study. The various areas that Martin Zacharias examines in his Molecular dynamics study include Van der Waals radius, Binding site and Intermolecular force. His studies in Stereochemistry integrate themes in fields like Cytosine, Thymine, Nucleobase and Enzyme inhibition.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Separation‐shifted scaling, a new scaling method for Lennard‐Jones interactions in thermodynamic integration

M. Zacharias;T. P. Straatsma;J. A. McCammon.
Journal of Chemical Physics (1994)

489 Citations

Protein–protein docking with a reduced protein model accounting for side-chain flexibility

Martin Zacharias.
Protein Science (2003)

330 Citations

A molecular mechanics/grid method for evaluation of ligand–receptor interactions

Brock A. Luty;Zelda R. Wasserman;Pieter F. W. Stouten;C. Nicholas Hodge.
Journal of Computational Chemistry (1995)

272 Citations

A family of macrodomain proteins reverses cellular mono-ADP-ribosylation

Gytis Jankevicius;Markus Hassler;Barbara Golia;Vladimir Rybin.
Nature Structural & Molecular Biology (2013)

251 Citations

A statistical analysis of random mutagenesis methods used for directed protein evolution.

Tuck Seng Wong;Danilo Roccatano;Martin Zacharias;Ulrich Schwaneberg.
Journal of Molecular Biology (2006)

192 Citations

Accounting for conformational changes during protein-protein docking.

Martin Zacharias.
Current Opinion in Structural Biology (2010)

152 Citations

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results

Shide Liang;Shide Liang;Dandan Zheng;Daron M Standley;Bo Yao.
BMC Bioinformatics (2010)

149 Citations

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

Sarel J. Fleishman;Sarel J. Fleishman;Timothy A. Whitehead;Eva Maria Strauch;Jacob E. Corn;Jacob E. Corn.
Journal of Molecular Biology (2011)

146 Citations

Multiple molecular architectures of the eye lens chaperone αB-crystallin elucidated by a triple hybrid approach.

Nathalie Braun;Martin Zacharias;Jirka Peschek;Andreas Kastenmüller.
Proceedings of the National Academy of Sciences of the United States of America (2011)

144 Citations

Bulge-Induced Bends in RNA: Quantification by Transient Electric Birefringence

Martin Zacharias;Paul J. Hagerman.
Journal of Molecular Biology (1995)

142 Citations

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