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Alexandre M. J. J. Bonvin

Alexandre M. J. J. Bonvin

Utrecht University
Netherlands

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Biology and Biochemistry
Netherlands
2023

D-Index & Metrics

Discipline name D-Index World Ranking Current World Ranking National Ranking Current National Ranking Publications Citations
Biology and Biochemistry 91 2287 2084 55 53 402 36708

Alexandre M. J. J. Bonvin publications per year

The chart shows the history of publications by Alexandre M. J. J. Bonvin between 1990 and 2025, highlighting the no. of papers published in each year and offering an overview of the publication velocity of this scholar. Alexandre M. J. J. Bonvin published across 36 years, from 1990 to 2025, averaging 12.9 papers a year. Output peaked at 36 publications in 2020. 32 of the 463 publications appeared in the last two years.

No. of publications
10 20 30
Bar chart. Horizontal axis: year, 1990 to 2025. Vertical axis: number of publications, 0 to 36. Peak 36 publications in 2020. 1990: 1 publication 1991: 3 publications 1992: 0 publications 1993: 5 publications 1994: 4 publications 1995: 3 publications 1996: 2 publications 1997: 2 publications 1998: 2 publications 1999: 1 publication 2000: 7 publications 2001: 2 publications 2002: 8 publications 2003: 12 publications 2004: 14 publications 2005: 15 publications 2006: 22 publications 2007: 10 publications 2008: 7 publications 2009: 10 publications 2010: 12 publications 2011: 16 publications 2012: 16 publications 2013: 21 publications 2014: 17 publications 2015: 24 publications 2016: 22 publications 2017: 31 publications 2018: 16 publications 2019: 22 publications 2020: 36 publications 2021: 25 publications 2022: 27 publications 2023: 16 publications 2024: 14 publications 2025: 18 publications
1990 2025

463 publications in total across all disciplines

View publications per year as a table
Alexandre M. J. J. Bonvin: publications per year, 1990 to 2025
Year Publications
1990 1
1991 3
1992 0
1993 5
1994 4
1995 3
1996 2
1997 2
1998 2
1999 1
2000 7
2001 2
2002 8
2003 12
2004 14
2005 15
2006 22
2007 10
2008 7
2009 10
2010 12
2011 16
2012 16
2013 21
2014 17
2015 24
2016 22
2017 31
2018 16
2019 22
2020 36
2021 25
2022 27
2023 16
2024 14
2025 18
Total 463
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Alexandre M. J. J. Bonvin publications per year - data summary

  • Alexandre M. J. J. Bonvin, a Biology and Biochemistry scholar from Utrecht University, has 463 publications recorded across 36 years, from 1990 to 2025.
  • The oldest publication on record dates to 1990 and the most recent to 2025.
  • The most productive year is 2020, with 36 publications.
  • The least productive years with any output are 1990 and 1999, with 1 publication each.
  • 1 of the 36 years in the span carries no publications at all (1992).
  • The rate of publication averages 12.9 papers per year over the whole span, or 13.2 per year counting only the 35 years with at least one publication.
  • The last 5 years on the chart (2021-2025) hold 100 publications, 22% of the career total.
  • Split into equal eras - 1990-2001: 32 publications (2.7 per year); 2002-2013: 163 publications (13.6 per year); 2014-2025: 268 publications (22.3 per year).
  • Comparing the opening and closing eras, the overall trend of publication is rising.

Alexandre M. J. J. Bonvin publication distribution in Biology and Biochemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Biology and Biochemistry in 2026. The highlighted bar marks where Alexandre M. J. J. Bonvin sits on this spectrum.

No. of scientists
200 400 600 800
Bar chart with 100 bars. Horizontal axis: publications, 47–56 to 1,028+. Vertical axis: number of scientists, 0 to 980. Most scientists, 980, have 127–136 publications. The last bar groups every scientist with 1,028 publications or more. The highlighted bar, 397–406 publications, is where this scientist sits. 47–56 publications: 8 scientists 57–66 publications: 35 scientists 67–76 publications: 106 scientists 77–86 publications: 231 scientists 87–96 publications: 413 scientists 97–106 publications: 546 scientists 107–116 publications: 704 scientists 117–126 publications: 848 scientists 127–136 publications: 980 scientists 137–146 publications: 942 scientists 147–156 publications: 969 scientists 157–166 publications: 949 scientists 167–176 publications: 951 scientists 177–186 publications: 915 scientists 187–196 publications: 787 scientists 197–206 publications: 840 scientists 207–216 publications: 733 scientists 217–226 publications: 708 scientists 227–236 publications: 651 scientists 237–246 publications: 605 scientists 247–256 publications: 510 scientists 257–266 publications: 524 scientists 267–276 publications: 434 scientists 277–286 publications: 417 scientists 287–296 publications: 350 scientists 297–306 publications: 363 scientists 307–316 publications: 315 scientists 317–326 publications: 296 scientists 327–336 publications: 261 scientists 337–346 publications: 240 scientists 347–356 publications: 219 scientists 357–366 publications: 196 scientists 367–376 publications: 154 scientists 377–386 publications: 161 scientists 387–396 publications: 155 scientists 397–406 publications: 145 scientists 407–416 publications: 124 scientists 417–426 publications: 112 scientists 427–436 publications: 132 scientists 437–446 publications: 116 scientists 447–456 publications: 99 scientists 457–466 publications: 81 scientists 467–476 publications: 91 scientists 477–486 publications: 80 scientists 487–496 publications: 80 scientists 497–506 publications: 59 scientists 507–516 publications: 36 scientists 517–526 publications: 46 scientists 527–536 publications: 54 scientists 537–546 publications: 44 scientists 547–556 publications: 43 scientists 557–566 publications: 43 scientists 567–576 publications: 42 scientists 577–586 publications: 25 scientists 587–596 publications: 34 scientists 597–606 publications: 23 scientists 607–616 publications: 33 scientists 617–626 publications: 31 scientists 627–636 publications: 27 scientists 637–646 publications: 25 scientists 647–656 publications: 28 scientists 657–666 publications: 34 scientists 667–676 publications: 18 scientists 677–686 publications: 16 scientists 687–696 publications: 10 scientists 697–706 publications: 12 scientists 707–716 publications: 21 scientists 717–726 publications: 12 scientists 727–736 publications: 12 scientists 737–746 publications: 10 scientists 747–756 publications: 7 scientists 757–766 publications: 13 scientists 767–776 publications: 15 scientists 777–786 publications: 13 scientists 787–796 publications: 9 scientists 797–806 publications: 9 scientists 807–816 publications: 7 scientists 817–826 publications: 4 scientists 827–836 publications: 9 scientists 837–846 publications: 7 scientists 847–856 publications: 3 scientists 857–866 publications: 5 scientists 867–876 publications: 5 scientists 877–886 publications: 11 scientists 887–896 publications: 3 scientists 897–906 publications: 4 scientists 907–916 publications: 7 scientists 917–926 publications: 5 scientists 927–936 publications: 6 scientists 937–946 publications: 6 scientists 947–956 publications: 3 scientists 957–966 publications: 7 scientists 967–976 publications: 2 scientists 977–986 publications: 2 scientists 987–996 publications: 1 scientist 997–1,006 publications: 5 scientists 1,007–1,016 publications: 2 scientists 1,017–1,026 publications: 2 scientists 1,027 publications: 1 scientist 1,028+ publications: 100 scientists
47–56 publications 1,028+

This scientist: 402 publications — 90th percentile

90% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,028 publications or more.

View publications distribution as a table
Number of Biology and Biochemistry scientists by publication count, Research.com 2026 ranking edition. Based on 19,587 ranked scientists.
Publications Scientists This scientist
47–56 8
57–66 35
67–76 106
77–86 231
87–96 413
97–106 546
107–116 704
117–126 848
127–136 980
137–146 942
147–156 969
157–166 949
167–176 951
177–186 915
187–196 787
197–206 840
207–216 733
217–226 708
227–236 651
237–246 605
247–256 510
257–266 524
267–276 434
277–286 417
287–296 350
297–306 363
307–316 315
317–326 296
327–336 261
337–346 240
347–356 219
357–366 196
367–376 154
377–386 161
387–396 155
397–406 145 402
407–416 124
417–426 112
427–436 132
437–446 116
447–456 99
457–466 81
467–476 91
477–486 80
487–496 80
497–506 59
507–516 36
517–526 46
527–536 54
537–546 44
547–556 43
557–566 43
567–576 42
577–586 25
587–596 34
597–606 23
607–616 33
617–626 31
627–636 27
637–646 25
647–656 28
657–666 34
667–676 18
677–686 16
687–696 10
697–706 12
707–716 21
717–726 12
727–736 12
737–746 10
747–756 7
757–766 13
767–776 15
777–786 13
787–796 9
797–806 9
807–816 7
817–826 4
827–836 9
837–846 7
847–856 3
857–866 5
867–876 5
877–886 11
887–896 3
897–906 4
907–916 7
917–926 5
927–936 6
937–946 6
947–956 3
957–966 7
967–976 2
977–986 2
987–996 1
997–1,006 5
1,007–1,016 2
1,017–1,026 2
1,027 1
1,028+ 100
Download as CSV

Alexandre M. J. J. Bonvin publication distribution in Biology and Biochemistry in 2026 - data summary

  • The chart plots the publication count of all 19,587 Biology and Biochemistry scientists ranked by Research.com in 2026, grouped into 100 ranges running from 47–56 to 1,028+ publications.
  • Alexandre M. J. J. Bonvin, a Biology and Biochemistry scholar from Utrecht University, records 402 publications - the 90th percentile of the discipline.
  • 90% of ranked Biology and Biochemistry scientists score the same or lower than Alexandre M. J. J. Bonvin, and about 10% score higher.
  • The median of the discipline falls in the 197–206 publications range, and Alexandre M. J. J. Bonvin ranks above the median.
  • The most crowded range is 127–136 publications, holding 980 scientists (5% of the field).
  • 77% of the field sits in the lowest quarter of the value range (up to 287–296 publications), so the distribution is heavily right-skewed and high scores are rare.
  • The final bar has no upper bound: it groups every scientist with 1,028 publications or more, 100 scientists in all (<1% of the field).

Alexandre M. J. J. Bonvin D-index placement in Biology and Biochemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Biology and Biochemistry scientists ranked by Research.com in 2026. The highlighted bar marks where Alexandre M. J. J. Bonvin sits on this spectrum.

No. of scientists
250 500 750 1,000 1,250
Bar chart with 65 bars. Horizontal axis: D-Index, 40–41 to 167+. Vertical axis: number of scientists, 0 to 1,253. Most scientists, 1,253, have 58–59 D-Index. The last bar groups every scientist with 167 D-Index or more. The highlighted bar, 90–91 D-Index, is where this scientist sits. 40–41 D-Index: 80 scientists 42–43 D-Index: 183 scientists 44–45 D-Index: 316 scientists 46–47 D-Index: 504 scientists 48–49 D-Index: 718 scientists 50–51 D-Index: 899 scientists 52–53 D-Index: 1,025 scientists 54–55 D-Index: 1,149 scientists 56–57 D-Index: 1,235 scientists 58–59 D-Index: 1,253 scientists 60–61 D-Index: 1,162 scientists 62–63 D-Index: 1,130 scientists 64–65 D-Index: 1,031 scientists 66–67 D-Index: 897 scientists 68–69 D-Index: 814 scientists 70–71 D-Index: 714 scientists 72–73 D-Index: 709 scientists 74–75 D-Index: 596 scientists 76–77 D-Index: 512 scientists 78–79 D-Index: 473 scientists 80–81 D-Index: 412 scientists 82–83 D-Index: 373 scientists 84–85 D-Index: 358 scientists 86–87 D-Index: 285 scientists 88–89 D-Index: 273 scientists 90–91 D-Index: 227 scientists 92–93 D-Index: 208 scientists 94–95 D-Index: 193 scientists 96–97 D-Index: 153 scientists 98–99 D-Index: 157 scientists 100–101 D-Index: 148 scientists 102–103 D-Index: 120 scientists 104–105 D-Index: 113 scientists 106–107 D-Index: 100 scientists 108–109 D-Index: 86 scientists 110–111 D-Index: 67 scientists 112–113 D-Index: 71 scientists 114–115 D-Index: 73 scientists 116–117 D-Index: 64 scientists 118–119 D-Index: 53 scientists 120–121 D-Index: 60 scientists 122–123 D-Index: 54 scientists 124–125 D-Index: 43 scientists 126–127 D-Index: 38 scientists 128–129 D-Index: 49 scientists 130–131 D-Index: 26 scientists 132–133 D-Index: 18 scientists 134–135 D-Index: 23 scientists 136–137 D-Index: 32 scientists 138–139 D-Index: 32 scientists 140–141 D-Index: 27 scientists 142–143 D-Index: 19 scientists 144–145 D-Index: 22 scientists 146–147 D-Index: 12 scientists 148–149 D-Index: 16 scientists 150–151 D-Index: 14 scientists 152–153 D-Index: 10 scientists 154–155 D-Index: 13 scientists 156–157 D-Index: 10 scientists 158–159 D-Index: 7 scientists 160–161 D-Index: 9 scientists 162–163 D-Index: 13 scientists 164–165 D-Index: 4 scientists 166 D-Index: 4 scientists 167+ D-Index: 98 scientists
40–41 D-Index 167+

This scientist: 91 D-Index — 88th percentile

88% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 167 D-Index or more.

View D-Index distribution as a table
Number of Biology and Biochemistry scientists by D-index, Research.com 2026 ranking edition. Based on 19,587 ranked scientists.
D-Index Scientists This scientist
40–41 80
42–43 183
44–45 316
46–47 504
48–49 718
50–51 899
52–53 1,025
54–55 1,149
56–57 1,235
58–59 1,253
60–61 1,162
62–63 1,130
64–65 1,031
66–67 897
68–69 814
70–71 714
72–73 709
74–75 596
76–77 512
78–79 473
80–81 412
82–83 373
84–85 358
86–87 285
88–89 273
90–91 227 91
92–93 208
94–95 193
96–97 153
98–99 157
100–101 148
102–103 120
104–105 113
106–107 100
108–109 86
110–111 67
112–113 71
114–115 73
116–117 64
118–119 53
120–121 60
122–123 54
124–125 43
126–127 38
128–129 49
130–131 26
132–133 18
134–135 23
136–137 32
138–139 32
140–141 27
142–143 19
144–145 22
146–147 12
148–149 16
150–151 14
152–153 10
154–155 13
156–157 10
158–159 7
160–161 9
162–163 13
164–165 4
166 4
167+ 98
Download as CSV

Alexandre M. J. J. Bonvin D-index placement in Biology and Biochemistry in 2026 - data summary

  • The chart plots the discipline H-index (D-index) of all 19,587 Biology and Biochemistry scientists ranked by Research.com in 2026, grouped into 65 ranges running from 40–41 to 167+ D-Index.
  • Alexandre M. J. J. Bonvin, a Biology and Biochemistry scholar from Utrecht University, records 91 D-Index - the 88th percentile of the discipline.
  • 88% of ranked Biology and Biochemistry scientists score the same or lower than Alexandre M. J. J. Bonvin, and about 12% score higher.
  • The median of the discipline falls in the 64–65 D-Index range, and Alexandre M. J. J. Bonvin ranks above the median.
  • The most crowded range is 58–59 D-Index, holding 1,253 scientists (6% of the field).
  • 71% of the field sits in the lowest quarter of the value range (up to 72–73 D-Index), so the distribution is heavily right-skewed and high scores are rare.
  • The final bar has no upper bound: it groups every scientist with 167 D-Index or more, 98 scientists in all (<1% of the field).

Research.com Recognitions

  • 2023 - Research.com Biology and Biochemistry in Netherlands Leader Award

Overview

Alexandre M. J. J. Bonvin is affiliated with Utrecht University in the Netherlands. Their research primarily focuses on the field of Biochemistry, Genetics, and Molecular Biology, with a significant number of publications in molecular biology as a subfield. Their scientific contributions span areas such as computational theory and mathematics, materials chemistry, radiology, nuclear medicine and imaging, and ecology.

Bonvin's work covers several key topics within molecular sciences, including:

  • Protein Structure and Dynamics
  • Computational Drug Discovery Methods
  • Enzyme Structure and Function
  • RNA and Protein Synthesis Mechanisms
  • Monoclonal and Polyclonal Antibodies Research
  • Bioinformatics and Genomic Networks
  • Microbial Metabolic Engineering and Bioproduction

Their recent publications demonstrate a strong focus on structural biology, computational modeling, and molecular simulations. Notable papers include:

  • Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem, 2021, Florence Research (University of Florence)
  • Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development, 2020, Processes
  • The HADDOCK2.4 web server for integrative modeling of biomolecular complexes, 2024, Nature Protocols
  • Teixobactin kills bacteria by a two-pronged attack on the cell envelope, 2022, Nature
  • DeepRank-GNN: a graph neural network framework to learn patterns in protein-protein interfaces, 2022, Bioinformatics

Frequent collaborators in Bonvin's research include Panagiotis I. Koukos, Rodrigo V. Honorato, Brian Jiménez-García, Marco Giulini, and Manon Réau. These coauthors have contributed to a substantial number of joint publications, indicating active and ongoing collaborative research efforts.

The scientist's work appears regularly in several publication venues, with the most frequent outlets being:

  • Zenodo (CERN European Organization for Nuclear Research)
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Proteins Structure Function and Bioinformatics
  • Nature Communications
  • Journal of Chemical Information and Modeling

Best Publications

  • HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.

    Cyril Dominguez;Rolf Boelens;Alexandre M J J Bonvin

  • The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

    G.C.P. van Zundert;J.P.G.L.M. Rodrigues;M. Trellet;C. Schmitz

  • The HADDOCK web server for data-driven biomolecular docking

    Sjoerd J de Vries;Marc van Dijk;Alexandre M J J Bonvin

  • PRODIGY: a web server for predicting the binding affinity of protein–protein complexes

    Li Xue;João Garcia Lopes Maia Rodrigues;Panagiotis L Kastritis;Alexandre Mjj Bonvin

  • Refinement of protein structures in explicit solvent.

    Jens P. Linge;Mark A. Williams;Christian A.E.M. Spronk;Alexandre M. J. J. Bonvin

  • The Nisin-Lipid II Complex Reveals a Pyrophosphate Cage that Provides a Blueprint for Novel Antibiotics

    Shang-Te D Hsu;Eefjan Breukink;Eugene Tischenko;Mandy A G Lutters

  • Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes

    Charalampos G. Kalodimos;Nikolaos Biris;Alexandre M. J. J. Bonvin;Marc M. Levandoski

  • Plectasin, a Fungal Defensin, Targets the Bacterial Cell Wall Precursor Lipid II

    Tanja Schneider;Thomas Kruse;Reinhard Wimmer;Imke Wiedemann

  • Sequence co-evolution gives 3D contacts and structures of protein complexes

    Thomas A Hopf;Charlotta P I Schärfe;Charlotta P I Schärfe;João P G L M Rodrigues;Anna G Green

  • Contacts-based prediction of binding affinity in protein-protein complexes.

    Anna Vangone;Alexandre M J J Bonvin

  • On the binding affinity of macromolecular interactions: daring to ask why proteins interact

    Panagiotis L. Kastritis;Alexandre M. J. J. Bonvin

  • Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem

    Rodrigo Vargas Honorato;Panagiotis I. Koukos;Brian Jiménez-García;Andrei Tsaregorodtsev

  • Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

    Thom Vreven;Iain H. Moal;Anna Vangone;Brian G. Pierce

  • Structural Basis for Signal-Sequence Recognition by the Translocase Motor SecA as Determined by NMR

    Ioannis Gelis;Alexandre M.J.J. Bonvin;Dimitra Keramisanou;Marina Koukaki

  • The α-to-β Conformational Transition of Alzheimer's Aβ-(1–42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of β Conformation Seeding

    Simona Tomaselli;Veronica Esposito;Paolo Vangone;Nico A. J. van Nuland;Nico A. J. van Nuland

  • Flexible protein-protein docking.

    Alexandre M. J. J. Bonvin

  • RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

    Aart J. Nederveen;Jurgen F. Doreleijers;Wim Vranken;Zachary Miller

  • 3D-DART: a DNA structure modelling server

    Marc van Dijk;Alexandre M. J. J. Bonvin

  • CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.

    Sjoerd J. de Vries;Alexandre M. J. J. Bonvin

  • Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development

    Outi M. H. Salo-Ahen;Ida Alanko;Rajendra Bhadane;Alexandre M. J. J. Bonvin

Frequent Co-Authors

Rolf Boelens
Rolf Boelens Utrecht University
Robert Kaptein
Robert Kaptein Utrecht University
Marc Baldus
Marc Baldus Utrecht University
Eefjan Breukink
Eefjan Breukink Utrecht University
Wim F. Vranken
Wim F. Vranken Vrije Universiteit Brussel
Zhiping Weng
Zhiping Weng University of Massachusetts Chan Medical School
Geerten W. Vuister
Geerten W. Vuister University of Leicester
Paul A. Bates
Paul A. Bates The Francis Crick Institute
Juan Fernández-Recio
Juan Fernández-Recio Spanish National Research Council
Shoshana J. Wodak
Shoshana J. Wodak Vrije Universiteit Brussel

External Links

Personal website of Alexandre M. J. J. Bonvin

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Publications: 64

Rolf Boelens

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Publications: 58

Rong Xiao

Rong Xiao

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Publications: 57

Marc Baldus

Marc Baldus

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Publications: 56

David Baker

David Baker

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Publications: 55

Juan Fernández-Recio

Juan Fernández-Recio

Spanish National Research Council

Publications: 54

Michael Sattler

Michael Sattler

Technical University of Munich

Publications: 50

Sabine André

Sabine André

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Publications: 50

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Cheryl H. Arrowsmith

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Publications: 48

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Publications: 47

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Publications: 45

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