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Alexandre M. J. J. Bonvin

Alexandre M. J. J. Bonvin

Utrecht University
Netherlands

Award Badge
Biology and Biochemistry
Netherlands
2023

D-Index & Metrics

Biology and Biochemistry

D-Index
91
Citations
36708
World Ranking
2288
National Ranking
55

Alexandre M. J. J. Bonvin publication distribution in Biology and Biochemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Biology and Biochemistry in 2026. The highlighted bar marks where Alexandre M. J. J. Bonvin sits on this spectrum.

47–56 publications: 8 scientists 57–66 publications: 35 scientists 67–76 publications: 106 scientists 77–86 publications: 231 scientists 87–96 publications: 414 scientists 97–106 publications: 546 scientists 107–116 publications: 704 scientists 117–126 publications: 849 scientists 127–136 publications: 980 scientists 137–146 publications: 942 scientists 147–156 publications: 969 scientists 157–166 publications: 950 scientists 167–176 publications: 951 scientists 177–186 publications: 915 scientists 187–196 publications: 787 scientists 197–206 publications: 841 scientists 207–216 publications: 735 scientists 217–226 publications: 709 scientists 227–236 publications: 651 scientists 237–246 publications: 605 scientists 247–256 publications: 510 scientists 257–266 publications: 524 scientists 267–276 publications: 434 scientists 277–286 publications: 418 scientists 287–296 publications: 350 scientists 297–306 publications: 363 scientists 307–316 publications: 315 scientists 317–326 publications: 296 scientists 327–336 publications: 261 scientists 337–346 publications: 240 scientists 347–356 publications: 219 scientists 357–366 publications: 197 scientists 367–376 publications: 154 scientists 377–386 publications: 161 scientists 387–396 publications: 155 scientists 397–406 publications: 145 scientists 407–416 publications: 124 scientists 417–426 publications: 112 scientists 427–436 publications: 132 scientists 437–446 publications: 116 scientists 447–456 publications: 99 scientists 457–466 publications: 81 scientists 467–476 publications: 91 scientists 477–486 publications: 80 scientists 487–496 publications: 80 scientists 497–506 publications: 60 scientists 507–516 publications: 36 scientists 517–526 publications: 46 scientists 527–536 publications: 54 scientists 537–546 publications: 44 scientists 547–556 publications: 43 scientists 557–566 publications: 43 scientists 567–576 publications: 42 scientists 577–586 publications: 25 scientists 587–596 publications: 34 scientists 597–606 publications: 23 scientists 607–616 publications: 33 scientists 617–626 publications: 31 scientists 627–636 publications: 27 scientists 637–646 publications: 25 scientists 647–656 publications: 28 scientists 657–666 publications: 34 scientists 667–676 publications: 18 scientists 677–686 publications: 16 scientists 687–696 publications: 10 scientists 697–706 publications: 12 scientists 707–716 publications: 21 scientists 717–726 publications: 12 scientists 727–736 publications: 12 scientists 737–746 publications: 10 scientists 747–756 publications: 7 scientists 757–766 publications: 13 scientists 767–776 publications: 15 scientists 777–786 publications: 13 scientists 787–796 publications: 9 scientists 797–806 publications: 9 scientists 807–816 publications: 7 scientists 817–826 publications: 4 scientists 827–836 publications: 9 scientists 837–846 publications: 7 scientists 847–856 publications: 3 scientists 857–866 publications: 5 scientists 867–876 publications: 5 scientists 877–886 publications: 11 scientists 887–896 publications: 3 scientists 897–906 publications: 4 scientists 907–916 publications: 7 scientists 917–926 publications: 5 scientists 927–936 publications: 6 scientists 937–946 publications: 6 scientists 947–956 publications: 3 scientists 957–966 publications: 7 scientists 967–976 publications: 2 scientists 977–986 publications: 2 scientists 987–996 publications: 1 scientists 997–1,006 publications: 5 scientists 1,007–1,016 publications: 2 scientists 1,017–1,026 publications: 2 scientists 1,027 publications: 1 scientists 1,028+ publications: 100 scientists
47 publications 1,028+

This scientist: 402 publications — 90th percentile

90% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,028 publications or more.

Alexandre M. J. J. Bonvin D-index placement in Biology and Biochemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Biology and Biochemistry scientists ranked by Research.com in 2026. The highlighted bar marks where Alexandre M. J. J. Bonvin sits on this spectrum.

40–41 D-Index: 80 scientists 42–43 D-Index: 183 scientists 44–45 D-Index: 317 scientists 46–47 D-Index: 504 scientists 48–49 D-Index: 718 scientists 50–51 D-Index: 900 scientists 52–53 D-Index: 1,026 scientists 54–55 D-Index: 1,150 scientists 56–57 D-Index: 1,236 scientists 58–59 D-Index: 1,253 scientists 60–61 D-Index: 1,163 scientists 62–63 D-Index: 1,131 scientists 64–65 D-Index: 1,032 scientists 66–67 D-Index: 897 scientists 68–69 D-Index: 814 scientists 70–71 D-Index: 715 scientists 72–73 D-Index: 709 scientists 74–75 D-Index: 596 scientists 76–77 D-Index: 512 scientists 78–79 D-Index: 473 scientists 80–81 D-Index: 412 scientists 82–83 D-Index: 373 scientists 84–85 D-Index: 358 scientists 86–87 D-Index: 285 scientists 88–89 D-Index: 273 scientists 90–91 D-Index: 227 scientists 92–93 D-Index: 208 scientists 94–95 D-Index: 193 scientists 96–97 D-Index: 153 scientists 98–99 D-Index: 157 scientists 100–101 D-Index: 148 scientists 102–103 D-Index: 120 scientists 104–105 D-Index: 113 scientists 106–107 D-Index: 100 scientists 108–109 D-Index: 86 scientists 110–111 D-Index: 67 scientists 112–113 D-Index: 72 scientists 114–115 D-Index: 73 scientists 116–117 D-Index: 64 scientists 118–119 D-Index: 53 scientists 120–121 D-Index: 60 scientists 122–123 D-Index: 54 scientists 124–125 D-Index: 43 scientists 126–127 D-Index: 38 scientists 128–129 D-Index: 49 scientists 130–131 D-Index: 26 scientists 132–133 D-Index: 18 scientists 134–135 D-Index: 23 scientists 136–137 D-Index: 32 scientists 138–139 D-Index: 32 scientists 140–141 D-Index: 27 scientists 142–143 D-Index: 19 scientists 144–145 D-Index: 22 scientists 146–147 D-Index: 12 scientists 148–149 D-Index: 16 scientists 150–151 D-Index: 14 scientists 152–153 D-Index: 10 scientists 154–155 D-Index: 13 scientists 156–157 D-Index: 10 scientists 158–159 D-Index: 7 scientists 160–161 D-Index: 9 scientists 162–163 D-Index: 13 scientists 164–165 D-Index: 4 scientists 166 D-Index: 4 scientists 167+ D-Index: 98 scientists
40 D-Index 167+

This scientist: 91 D-Index — 88th percentile

88% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 167 D-Index or more.

Research.com Recognitions

  • 2023 - Research.com Biology and Biochemistry in Netherlands Leader Award

Overview

Alexandre M. J. J. Bonvin is affiliated with Utrecht University in the Netherlands. Their research primarily focuses on the field of Biochemistry, Genetics, and Molecular Biology, with a significant number of publications in molecular biology as a subfield. Their scientific contributions span areas such as computational theory and mathematics, materials chemistry, radiology, nuclear medicine and imaging, and ecology.

Bonvin's work covers several key topics within molecular sciences, including:

  • Protein Structure and Dynamics
  • Computational Drug Discovery Methods
  • Enzyme Structure and Function
  • RNA and Protein Synthesis Mechanisms
  • Monoclonal and Polyclonal Antibodies Research
  • Bioinformatics and Genomic Networks
  • Microbial Metabolic Engineering and Bioproduction

Their recent publications demonstrate a strong focus on structural biology, computational modeling, and molecular simulations. Notable papers include:

  • Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem, 2021, Florence Research (University of Florence)
  • Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development, 2020, Processes
  • The HADDOCK2.4 web server for integrative modeling of biomolecular complexes, 2024, Nature Protocols
  • Teixobactin kills bacteria by a two-pronged attack on the cell envelope, 2022, Nature
  • DeepRank-GNN: a graph neural network framework to learn patterns in protein-protein interfaces, 2022, Bioinformatics

Frequent collaborators in Bonvin's research include Panagiotis I. Koukos, Rodrigo V. Honorato, Brian Jiménez-García, Marco Giulini, and Manon Réau. These coauthors have contributed to a substantial number of joint publications, indicating active and ongoing collaborative research efforts.

The scientist's work appears regularly in several publication venues, with the most frequent outlets being:

  • Zenodo (CERN European Organization for Nuclear Research)
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Proteins Structure Function and Bioinformatics
  • Nature Communications
  • Journal of Chemical Information and Modeling

Best Publications

  • HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.

    Cyril Dominguez;Rolf Boelens;Alexandre M J J Bonvin

  • The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

    G.C.P. van Zundert;J.P.G.L.M. Rodrigues;M. Trellet;C. Schmitz

  • The HADDOCK web server for data-driven biomolecular docking

    Sjoerd J de Vries;Marc van Dijk;Alexandre M J J Bonvin

  • PRODIGY: a web server for predicting the binding affinity of protein–protein complexes

    Li Xue;João Garcia Lopes Maia Rodrigues;Panagiotis L Kastritis;Alexandre Mjj Bonvin

  • Refinement of protein structures in explicit solvent.

    Jens P. Linge;Mark A. Williams;Christian A.E.M. Spronk;Alexandre M. J. J. Bonvin

  • The Nisin-Lipid II Complex Reveals a Pyrophosphate Cage that Provides a Blueprint for Novel Antibiotics

    Shang-Te D Hsu;Eefjan Breukink;Eugene Tischenko;Mandy A G Lutters

  • Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes

    Charalampos G. Kalodimos;Nikolaos Biris;Alexandre M. J. J. Bonvin;Marc M. Levandoski

  • Plectasin, a Fungal Defensin, Targets the Bacterial Cell Wall Precursor Lipid II

    Tanja Schneider;Thomas Kruse;Reinhard Wimmer;Imke Wiedemann

  • Sequence co-evolution gives 3D contacts and structures of protein complexes

    Thomas A Hopf;Charlotta P I Schärfe;Charlotta P I Schärfe;João P G L M Rodrigues;Anna G Green

  • Contacts-based prediction of binding affinity in protein-protein complexes.

    Anna Vangone;Alexandre M J J Bonvin

  • On the binding affinity of macromolecular interactions: daring to ask why proteins interact

    Panagiotis L. Kastritis;Alexandre M. J. J. Bonvin

  • Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem

    Rodrigo Vargas Honorato;Panagiotis I. Koukos;Brian Jiménez-García;Andrei Tsaregorodtsev

  • Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

    Thom Vreven;Iain H. Moal;Anna Vangone;Brian G. Pierce

  • Structural Basis for Signal-Sequence Recognition by the Translocase Motor SecA as Determined by NMR

    Ioannis Gelis;Alexandre M.J.J. Bonvin;Dimitra Keramisanou;Marina Koukaki

  • The α-to-β Conformational Transition of Alzheimer's Aβ-(1–42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of β Conformation Seeding

    Simona Tomaselli;Veronica Esposito;Paolo Vangone;Nico A. J. van Nuland;Nico A. J. van Nuland

  • Flexible protein-protein docking.

    Alexandre M. J. J. Bonvin

  • RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

    Aart J. Nederveen;Jurgen F. Doreleijers;Wim Vranken;Zachary Miller

  • 3D-DART: a DNA structure modelling server

    Marc van Dijk;Alexandre M. J. J. Bonvin

  • CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.

    Sjoerd J. de Vries;Alexandre M. J. J. Bonvin

  • Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development

    Outi M. H. Salo-Ahen;Ida Alanko;Rajendra Bhadane;Alexandre M. J. J. Bonvin

Frequent Co-Authors

Rolf Boelens
Rolf Boelens Utrecht University
Robert Kaptein
Robert Kaptein Utrecht University
Marc Baldus
Marc Baldus Utrecht University
Eefjan Breukink
Eefjan Breukink Utrecht University
Wim F. Vranken
Wim F. Vranken Vrije Universiteit Brussel
Zhiping Weng
Zhiping Weng University of Massachusetts Chan Medical School
Geerten W. Vuister
Geerten W. Vuister University of Leicester
Paul A. Bates
Paul A. Bates The Francis Crick Institute
Juan Fernández-Recio
Juan Fernández-Recio Spanish National Research Council
Shoshana J. Wodak
Shoshana J. Wodak Vrije Universiteit Brussel

External Links

Personal website of Alexandre M. J. J. Bonvin

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Best Scientists Citing Alexandre M. J. J. Bonvin

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Hans-Joachim Gabius

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Peter Güntert

Peter Güntert

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Publications: 64

Rolf Boelens

Rolf Boelens

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Publications: 58

Rong Xiao

Rong Xiao

Rutgers, The State University of New Jersey

Publications: 57

Marc Baldus

Marc Baldus

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Publications: 56

David Baker

David Baker

University of Washington

Publications: 55

Juan Fernández-Recio

Juan Fernández-Recio

Spanish National Research Council

Publications: 54

Michael Sattler

Michael Sattler

Technical University of Munich

Publications: 50

Sabine André

Sabine André

Ludwig-Maximilians-Universität München

Publications: 50

Cheryl H. Arrowsmith

Cheryl H. Arrowsmith

Structural Genomics Consortium

Publications: 48

Lewis E. Kay

Lewis E. Kay

University of Toronto

Publications: 47

Andrej Sali

Andrej Sali

University of California, San Francisco

Publications: 45

Michael Nilges

Michael Nilges

Université Paris Cité

Publications: 44

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John L. Markley

University of Wisconsin–Madison

Publications: 44

Debora S. Marks

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Harvard University

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