2023 - Research.com Biology and Biochemistry in Netherlands Leader Award
Docking, Computational biology, Searching the conformational space for docking, Stereochemistry and Biochemistry are his primary areas of study. His work in the fields of Docking, such as Macromolecular docking, intersects with other areas such as Haddock. His research integrates issues of Genetics, Experimental data, Protein protein, Molecular Docking Simulation and Data science in his study of Computational biology.
In his research, Algorithm is intimately related to Protein–ligand docking, which falls under the overarching field of Searching the conformational space for docking. His Stereochemistry research incorporates themes from Protein structure, Lantibiotics, Lipid II and Peptide. The various areas that Alexandre M. J. J. Bonvin examines in his Biochemistry study include Antimicrobial, Microbiology and Bacteria.
The scientist’s investigation covers issues in Docking, Computational biology, Biochemistry, Protein structure and Crystallography. His research in the fields of Searching the conformational space for docking, Macromolecular docking and Protein protein overlaps with other disciplines such as Haddock. The study incorporates disciplines such as Structural biology and Protein–protein interaction in addition to Computational biology.
His work carried out in the field of Biochemistry brings together such families of science as Biophysics and Stereochemistry. His Protein structure research incorporates elements of Plasma protein binding and Protein folding. His Crystallography study integrates concerns from other disciplines, such as Chemical shift, Nuclear magnetic resonance spectroscopy, Hydrogen bond and Molecular dynamics.
Alexandre M. J. J. Bonvin spends much of his time researching Docking, Computational biology, Haddock, Protein protein and Biological system. His Macromolecular docking study in the realm of Docking interacts with subjects such as Ab initio. His study in Computational biology is interdisciplinary in nature, drawing from both Protein structure, Lipid bilayer, Membrane protein and Function.
Structural biology is closely connected to Membrane associated in his research, which is encompassed under the umbrella topic of Membrane protein. Alexandre M. J. J. Bonvin integrates Haddock and Force field in his studies. His Binding site study deals with Metadynamics intersecting with Small molecule and Druggability.
His scientific interests lie mostly in Docking, Computational biology, Structural biology, Haddock and Biological system. The various areas that Alexandre M. J. J. Bonvin examines in his Docking study include Biophysics and Ligand. The Biophysics study combines topics in areas such as Amino acid, Site-directed mutagenesis and Tetramer.
His Ligand research includes elements of Metadynamics, Molecular dynamics, Molecular recognition, Computational science and Web server. His Computational biology research is multidisciplinary, incorporating elements of Epitope, Antigen, Antibody antigen and Monoclonal antibody. His work deals with themes such as Intermolecular force, van der Waals force, Proteomics and Biochemical engineering, which intersect with Structural biology.
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HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
Cyril Dominguez;Rolf Boelens;Alexandre M J J Bonvin.
Journal of the American Chemical Society (2003)
The HADDOCK web server for data-driven biomolecular docking
Sjoerd J de Vries;Marc van Dijk;Alexandre M J J Bonvin.
Nature Protocols (2010)
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.
G.C.P. van Zundert;J.P.G.L.M. Rodrigues;M. Trellet;C. Schmitz.
Journal of Molecular Biology (2016)
Refinement of protein structures in explicit solvent.
Jens P. Linge;Mark A. Williams;Christian A.E.M. Spronk;Alexandre M. J. J. Bonvin.
HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets.
Sjoerd J. de Vries;Aalt D. J. van Dijk;Mickaël Krzeminski;Mark van Dijk.
The Nisin-Lipid II Complex Reveals a Pyrophosphate Cage that Provides a Blueprint for Novel Antibiotics
Shang-Te D Hsu;Eefjan Breukink;Eugene Tischenko;Mandy A G Lutters.
Nature Structural & Molecular Biology (2004)
Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes
Charalampos G. Kalodimos;Nikolaos Biris;Alexandre M. J. J. Bonvin;Marc M. Levandoski.
Sequence co-evolution gives 3D contacts and structures of protein complexes
Thomas A Hopf;Charlotta P I Schärfe;Charlotta P I Schärfe;João P G L M Rodrigues;Anna G Green.
Plectasin, a Fungal Defensin, Targets the Bacterial Cell Wall Precursor Lipid II
Tanja Schneider;Thomas Kruse;Reinhard Wimmer;Imke Wiedemann.
Structural Basis for Signal-Sequence Recognition by the Translocase Motor SecA as Determined by NMR
Ioannis Gelis;Alexandre M.J.J. Bonvin;Dimitra Keramisanou;Marina Koukaki.
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