D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics D-index 78 Citations 23,831 235 World Ranking 1111 National Ranking 16

Research.com Recognitions

Awards & Achievements

2016 - Fellow of the International Society for Computational Biology

Member of the European Molecular Biology Organization (EMBO)

Overview

What is she best known for?

The fields of study she is best known for:

  • Gene
  • Enzyme
  • DNA

The scientist’s investigation covers issues in Computational biology, Crystallography, Protein structure, Docking and Protein–protein interaction. Her biological study spans a wide range of topics, including Genetics, Disease gene, Proteomics and Bioinformatics. Her Crystallography research includes themes of Coordination geometry, Algorithm, Zinc and Ligand.

Her Algorithm research incorporates themes from Atomic model, R-value, Sequence and Structure factor. Her Protein structure research includes elements of Protein tertiary structure, Sequence alignment, Protein secondary structure, Protein folding and Biological system. Her Protein–protein interaction research is multidisciplinary, incorporating perspectives in Markov chain, Cluster analysis and Graph.

Her most cited work include:

  • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae (2539 citations)
  • SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model (752 citations)
  • SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model (752 citations)

What are the main themes of her work throughout her whole career to date?

Shoshana J. Wodak spends much of her time researching Computational biology, Protein structure, Crystallography, Stereochemistry and Protein–protein interaction. Her research in Computational biology intersects with topics in Genetics, Gene, Saccharomyces cerevisiae, Docking and Bioinformatics. The Docking study combines topics in areas such as Machine learning and Artificial intelligence.

The subject of her Protein structure research is within the realm of Biochemistry. Shoshana J. Wodak has researched Crystallography in several fields, including Molecular dynamics, Dimer, Molecule, Algorithm and Binding site. Her Molecular dynamics research integrates issues from Hydrophobic effect and Statistical physics.

She most often published in these fields:

  • Computational biology (28.68%)
  • Protein structure (24.63%)
  • Crystallography (27.21%)

What were the highlights of her more recent work (between 2011-2021)?

  • Computational biology (28.68%)
  • Protein–protein interaction (11.76%)
  • Docking (7.72%)

In recent papers she was focusing on the following fields of study:

Her primary scientific interests are in Computational biology, Protein–protein interaction, Docking, Critical assessment and Macromolecular docking. Shoshana J. Wodak undertakes interdisciplinary study in the fields of Computational biology and Template through her research. Her Protein–protein interaction study integrates concerns from other disciplines, such as Residue, Pairwise comparison and Peptide.

She studied Peptide and Resource that intersect with Proteomics. The concepts of her Macromolecular docking study are interwoven with issues in Data mining and Molecular Docking Simulation. Her research integrates issues of Crystallography, Structural biology and Protein subunit in her study of Protein Data Bank.

Between 2011 and 2021, her most popular works were:

  • A census of human soluble protein complexes. (590 citations)
  • Interaction landscape of membrane - protein complexes in Saccharomyces cerevisiae (189 citations)
  • Docking, scoring, and affinity prediction in CAPRI (181 citations)

In her most recent research, the most cited papers focused on:

  • Gene
  • Enzyme
  • DNA

Shoshana J. Wodak mainly focuses on Computational biology, Docking, Macromolecular docking, Critical assessment and Protein–protein interaction. Her Computational biology research incorporates elements of Bioinformatics, Proteomics, Deep sequencing, CASP and Molecular biology. In the field of Proteomics, her study on Proteomic Profiling overlaps with subjects such as Putative protein.

Her Docking course of study focuses on Protein structure prediction and Artificial intelligence, Machine learning and Server. Shoshana J. Wodak combines subjects such as Set and Protein protein interaction network with her study of Protein–protein interaction. Her Molecular Docking Simulation research is multidisciplinary, incorporating elements of Crystallography, Molecular recognition, Biological system and Force field.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

Nevan J. Krogan;Gerard Cagney;Gerard Cagney;Haiyuan Yu;Gouqing Zhong.
Nature (2006)

3337 Citations

SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model

Alexei A. Vaguine;Jean Richelle;Shoshana Wodak;Shoshana Wodak.
Acta Crystallographica Section D-biological Crystallography (1999)

1233 Citations

A census of human soluble protein complexes.

Pierre C. Havugimana;G. Traver Hart;Tamás Nepusz;Haixuan Yang.
Cell (2012)

818 Citations

Up-to-date catalogues of yeast protein complexes

Shuye Pu;Jessica Wong;Brian Turner;Emerson Cho.
Nucleic Acids Research (2009)

775 Citations

Deviations from standard atomic volumes as a quality measure for protein crystal structures

Joan Pontius;Jean Richelle;Shoshana J. Wodak.
Journal of Molecular Biology (1996)

744 Citations

CAPRI: A Critical Assessment of PRedicted Interactions

Joel Janin;Kim Henrick;John Moult;Lynn Ten Eyck.
Proteins (2003)

727 Citations

Analysis of zinc binding sites in protein crystal structures.

Ian L. Alberts;Katalin Nadassy;Katalin Nadassy;Shoshana J. Wodak;Shoshana J. Wodak.
Protein Science (1998)

576 Citations

Assessment of blind predictions of protein-protein interactions: Current status of docking methods

Raúl Méndez;Raphaël Leplae;Leonardo De Maria;Shoshana J. Wodak.
Proteins (2003)

444 Citations

Structural Features of Protein−Nucleic Acid Recognition Sites†

Katalin Nadassy;Shoshana J. Wodak;Joël Janin.
Biochemistry (1999)

409 Citations

CYGD: the Comprehensive Yeast Genome Database

U. Güldener;M. Münsterkötter;G. Kastenmüller;N. Strack.
Nucleic Acids Research (2004)

408 Citations

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