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D-Index & Metrics

Chemistry

D-Index
97
Citations
45671
World Ranking
1435
National Ranking
554

Research.com Recognitions

  • 2001 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

John L. Markley is affiliated with the University of Wisconsin-Madison in the United States. Their research spans multiple areas within biochemistry, genetics, and molecular biology, with significant contributions to medicine.

The scientist has been involved in 37 publications related to Biochemistry, Genetics and Molecular Biology, and 20 related to Medicine. Their work extends deeply into subfields such as Molecular Biology, Spectroscopy, Infectious Diseases, Nuclear and High Energy Physics, and Radiology, Nuclear Medicine and Imaging.

The main topics in their work include:

  • Protein Structure and Dynamics
  • Metabolomics and Mass Spectrometry Studies
  • Protein Degradation and Inhibitors
  • Advanced NMR Techniques and Applications
  • NMR spectroscopy and applications
  • Advanced MRI Techniques and Applications
  • Multiple Myeloma Research and Treatments

Some recent papers authored by or involving John L. Markley include:

  • The Protein Data Bank Archive, 2021, Methods in molecular biology
  • Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane, 2020, Proceedings of the National Academy of Sciences
  • Templated Collagen "Double Helices" Maintain Their Structure, 2020, Journal of the American Chemical Society
  • Structural Insights into the Recognition of Mono- and Diacetylated Histones by the ATAD2B Bromodomain, 2020, Journal of Medicinal Chemistry
  • The BRPF1 bromodomain is a molecular reader of di-acetyllysine, 2020, Current Research in Structural Biology

Frequent coauthors of John L. Markley include:

  • Woonghee Lee
  • Marco Tonelli
  • Gabriel Cornilescu
  • Margaret Phillips
  • Chiara M. Evans

Notable publication venues where John L. Markley has published multiple papers are:

  • Bioinformatics
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Biophysical Journal
  • Biopolymers
  • Methods in molecular biology

John L. Markley was recognized as a Fellow of the American Association for the Advancement of Science (AAAS) in 2001.

Best Publications

  • 1H, 13C and 15N chemical shift referencing in biomolecular NMR

    D S Wishart;C G Bigam;J Yao;F Abildgaard

  • NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy

    Woonghee Lee;Marco Tonelli;John L. Markley

  • The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

    Helen M. Berman;Kim Henrick;Haruki Nakamura;John L. Markley

  • Protein Data Bank: the single global archive for 3D macromolecular structure data

    Stephen K Burley;Helen M Berman;Charmi Bhikadiya

  • BioMagResBank

    Unknown

  • Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.

    Stephen K. Burley;Stephen K. Burley;Helen M. Berman;Gerard J. Kleywegt;John L. Markley

  • The future of NMR-based metabolomics.

    John L Markley;Rafael Brüschweiler;Arthur S Edison;Hamid R Eghbalnia

  • Metabolite identification via the Madison Metabolomics Consortium Database.

    Qiu Cui;Ian A Lewis;Adrian D Hegeman;Mark E Anderson

  • Recommendations for the presentation of NMR structures of proteins and nucleic acids

    John L. Markley;Ad Bax;Yoji Arata;C. W. Hilbers

  • Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy.

    John L. Markley;Ad Bax;Yoji Arata;C. W. Hilbers

  • Mitochondrial metabolism promotes adaptation to proteotoxic stress.

    Peter Tsvetkov;Alexandre Detappe;Kai Cai;Heather R Keys

  • Recommendations for the presentation of NMR structures of proteins and nucleic acids (IUPAC Recommendations 1998)

    John L. Markley;Ad Bax;Yoji Arata;C. W. Hilbers

  • A relational database for sequence-specific protein NMR data.

    Beverly R. Seavey;Elizabeth A. Farr;William M. Westler;John L. Markley

  • Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations

    Michele L. DeRider;Steven J. Wilkens;Michael J. Waddell;Lynn E. Bretscher

  • Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction

    William C. Hallows;Wei Yu;Brian C. Smith;Mark K. Devries

  • Solution structure of the transmembrane H+-transporting subunit c of the F1F0 ATP synthase.

    Mark E. Girvin;Vinit K. Rastogi;Frits Abildgaard;John L. Markley

  • RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

    Aart J. Nederveen;Jurgen F. Doreleijers;Wim Vranken;Zachary Miller

  • Observation of histidine residues in proteins by nuclear magnetic resonance spectroscopy

    Unknown

  • Method for determining molar concentrations of metabolites in complex solutions from two-dimensional 1H-13C NMR spectra.

    Ian A. Lewis;Seth C. Schommer;Brendan Hodis;Kate A. Robb

  • Validation of Structures in the Protein Data Bank

    Swanand Gore;Eduardo Sanz García;Pieter M.S. Hendrickx;Aleksandras Gutmanas

  • High-resolution nuclear magnetic resonance spectra of selectively deuterated staphylococcal nuclease.

    John L. Markley;Irving Putter;Oleg Jardetzky

  • Crystallization and structure determination to 2.5-A resolution of the oxidized [2Fe-2S] ferredoxin isolated from Anabaena 7120.

    Wojciech R. Rypniewski;Deborah R. Breiter;Matthew M. Benning;Gary Wesenberg

  • Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy

    Arash Bahrami;Amir H. Assadi;John L. Markley;Hamid R. Eghbalnia

  • Evidence for a molten globule-like transition state in protein folding from determination of activation volumes.

    Gediminas J. A. Vidugiris;John L. Markley;Catherine A. Royer

  • Microscopic pKa values of Escherichia coli thioredoxin.

    Peter T. Chivers;Kenneth E. Prehoda;Brian F. Volkman;Byung-Moon Kim

Frequent Co-Authors

Brian F. Volkman
Brian F. Volkman Medical College of Wisconsin
Brian G. Fox
Brian G. Fox University of Wisconsin–Madison
Helen M. Berman
Helen M. Berman Rutgers, The State University of New Jersey
Haruki Nakamura
Haruki Nakamura Osaka University
Stephen K. Burley
Stephen K. Burley Rutgers, The State University of New Jersey
Gerard J. Kleywegt
Gerard J. Kleywegt European Bioinformatics Institute
Sameer Velankar
Sameer Velankar European Bioinformatics Institute
George N. Phillips
George N. Phillips Rice University
John D. Westbrook
John D. Westbrook Rutgers, The State University of New Jersey
Frank Weinhold
Frank Weinhold University of Wisconsin–Madison

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