Jason D. Buenrostro

Overview

Best Publications

• Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

  Jason D Buenrostro;Paul G Giresi;Lisa C Zaba;Howard Y Chang

  6106
  Citations

• ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide

  Jason D. Buenrostro;Beijing Wu;Howard Y. Chang;William J. Greenleaf

  3094
  Citations

• Single-cell chromatin accessibility reveals principles of regulatory variation

  Jason D. Buenrostro;Beijing Wu;Ulrike M. Litzenburger;Dave Ruff

  2057
  Citations

• chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

  Alicia N Schep;Beijing Wu;Jason D Buenrostro;William J Greenleaf

  1294
  Citations

• Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

  M Ryan Corces;Jason D Buenrostro;Jason D Buenrostro;Beijing Wu;Peyton G Greenside

  1082
  Citations

• Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types.

  Hilary K Finucane;Hilary K Finucane;Hilary K Finucane;Yakir A Reshef;Verneri Anttila;Verneri Anttila;Kamil Slowikowski;Kamil Slowikowski;Kamil Slowikowski

  961
  Citations

• Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin.

  Sai Ma;Bing Zhang;Lindsay M. LaFave;Andrew S. Earl

  789
  Citations

• Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation

  Jason D. Buenrostro;Jason D. Buenrostro;M. Ryan Corces;Caleb A. Lareau;Caleb A. Lareau;Beijing Wu

  629
  Citations

• The cis-Regulatory Atlas of the Mouse Immune System

  Hideyuki Yoshida;Caleb A. Lareau;Ricardo N. Ramirez;Samuel A. Rose

  495
  Citations

• Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.

  Tommaso Biancalani;Gabriele Scalia;Gabriele Scalia;Lorenzo Buffoni;Raghav Avasthi;Raghav Avasthi

  477
  Citations

• Induction and transcriptional regulation of the co-inhibitory gene module in T cells

  Norio Chihara;Asaf Madi;Asaf Madi;Takaaki Kondo;Huiyuan Zhang

  469
  Citations

• Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics.

  Leif S. Ludwig;Leif S. Ludwig;Caleb A. Lareau;Jacob C. Ulirsch;Elena Christian

  432
  Citations

• Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility.

  Caleb A Lareau;Fabiana M Duarte;Fabiana M Duarte;Jennifer G Chew;Vinay K Kartha;Vinay K Kartha

  389
  Citations

• Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries

  Meredith L. Carpenter;Jason D. Buenrostro;Cristina Valdiosera;Cristina Valdiosera;Hannes Schroeder

  365
  Citations

• Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

  Alicia N. Schep;Jason D. Buenrostro;Sarah K. Denny;Katja Schwartz

  362
  Citations

• Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

  Huidong Chen;Luca Albergante;Luca Albergante;Jonathan Y. Hsu;Jonathan Y. Hsu;Caleb A. Lareau;Caleb A. Lareau

  319
  Citations

• Assessment of computational methods for the analysis of single-cell ATAC-seq data

  Huidong Chen;Caleb Lareau;Caleb Lareau;Tommaso Andreani;Michael E. Vinyard

  290
  Citations

• Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes.

  Jason D Buenrostro;Carlos L Araya;Lauren M Chircus;Curtis J Layton

  256
  Citations

• ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing

  Xingqi Chen;Ying Shen;Will Draper;Jason D Buenrostro

  239
  Citations

• Chromatin potential identified by shared single cell profiling of RNA and chromatin

  Sai Ma;Sai Ma;Sai Ma;Bing Zhang;Lindsay LaFave;Lindsay LaFave;Zachary Chiang

  118
  Citations