Nir Yosef

Research.com Recognitions

• 2016 - Fellow of Alfred P. Sloan Foundation

Overview

Best Publications

• Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

  Kelly Street;Davide Risso;Russell B. Fletcher;Diya Das

  2171
  Citations

• Deep generative modeling for single-cell transcriptomics.

  Romain Lopez;Jeffrey Regier;Michael B Cole;Michael I Jordan

  1664
  Citations

• The Human Cell Atlas

  Aviv Regev;Aviv Regev;Aviv Regev;Sarah A Teichmann;Sarah A Teichmann;Sarah A Teichmann;Eric S Lander;Eric S Lander;Eric S Lander;Ido Amit

  1560
  Citations

• Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

  Alex K. Shalek;Rahul Satija;Xian Adiconis;Rona S. Gertner

  1399
  Citations

• Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

  Alex K. Shalek;Rahul Satija;Joe Shuga;John J. Trombetta

  1292
  Citations

• Sodium chloride drives autoimmune disease by the induction of pathogenic TH17 cells

  Markus Kleinewietfeld;Arndt Manzel;Arndt Manzel;Jens Titze;Jens Titze;Heda Kvakan

  1283
  Citations

• Induction and molecular signature of pathogenic TH17 cells

  Youjin Lee;Amit Awasthi;Amit Awasthi;Nir Yosef;Nir Yosef;Francisco Javier Quintana

  1116
  Citations

• Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis

  Noa Novershtern;Noa Novershtern;Noa Novershtern;Aravind Subramanian;Lee N. Lawton;Raymond H. Mak

  1109
  Citations

• The epigenetic landscape of T cell exhaustion

  Debattama R. Sen;James Kaminski;R. Anthony Barnitz;Makoto Kurachi

  962
  Citations

• Induction of pathogenic Th17 cells by inducible salt sensing kinase SGK1

  Chuan Wu;Nir Yosef;Nir Yosef;Theresa Thalhamer;Theresa Thalhamer;Chen Zhu

  913
  Citations

• Dynamic regulatory network controlling Th17 cell differentiation

  Nir Yosef;Alex K. Shalek;Jellert T. Gaublomme;Hulin Jin

  790
  Citations

• Revealing the vectors of cellular identity with single-cell genomics

  Allon Wagner;Aviv Regev;Nir Yosef;Nir Yosef

  619
  Citations

• Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

  Jellert T. Gaublomme;Nir Yosef;Youjin Lee;Rona S. Gertner

  578
  Citations

• A high throughput Chromatin ImmunoPrecipitation approach reveals principles of dynamic gene regulation in mammals

  Manuel Garber;Nir Yosef;Nir Yosef;Alon Goren;Raktima Raychowdhury

  425
  Citations

• Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells

  Oren Ram;Alon Goren;Ido Amit;Ido Amit;Noam Shoresh

  394
  Citations

• CD5L/AIM Regulates Lipid Biosynthesis and Restrains Th17 Cell Pathogenicity

  Chao Wang;Nir Yosef;Nir Yosef;Jellert Gaublomme;Jellert Gaublomme;Chuan Wu

  374
  Citations

• Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models.

  Chenling Xu;Romain Lopez;Edouard Mehlman;Edouard Mehlman;Jeffrey Regier

  372
  Citations

• The transcription factor BATF operates as an essential differentiation checkpoint in early effector CD8+ T cells

  Makoto Kurachi;R Anthony Barnitz;Nir Yosef;Pamela M Odorizzi

  364
  Citations

• Mapping single-cell data to reference atlases by transfer learning.

  Mohammad Lotfollahi;Mohsen Naghipourfar;Malte D. Luecken;Matin Khajavi

  352
  Citations

• Joint probabilistic modeling of single-cell multi-omic data with totalVI

  Adam Gayoso;Zoë Steier;Romain Lopez;Jeffrey Regier

  339
  Citations