World's Best Scientists 2026 revealed!

D-Index & Metrics

Biology and Biochemistry

D-Index
71
Citations
106118
World Ranking
6479
National Ranking
3015

Overview

Rahul Satija is affiliated with New York University in the United States and conducts research primarily in the field of Biochemistry, Genetics, and Molecular Biology. Their work spans several subfields including Molecular Biology, Immunology, Biophysics, Plant Science, and Genetics.

Their research extensively covers topics such as Single-cell and spatial transcriptomics, Cell Image Analysis Techniques, Gene Regulatory Network Analysis, Gene expression and cancer classification, CRISPR and Genetic Engineering, RNA Research and Splicing, and T-cell and B-cell Immunology.

Satija has published in various venues, with frequent contributions to:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • Cell
  • Nature Biotechnology
  • Nature Methods

Some recent notable papers include:

  • Integrated analysis of multimodal single-cell data, 2021, Cell
  • Dictionary learning for integrative, multimodal and scalable single-cell analysis, 2023, Nature Biotechnology
  • Single-cell chromatin state analysis with Signac, 2021, Nature Methods
  • The technological landscape and applications of single-cell multi-omics, 2023, Nature Reviews Molecular Cell Biology
  • Comparison and evaluation of statistical error models for scRNA-seq, 2022, Genome biology

Frequent co-authors collaborating with Satija include:

  • Yuhan Hao
  • Austin Hartman
  • Carol Dalgarno
  • Tim Stuart
  • Efthymia Papalexi

Best Publications

  • Integrated analysis of multimodal single-cell data

    Yuhan Hao;Stephanie Hao;Erica Andersen-Nissen;William M. Mauck

  • Comprehensive Integration of Single-Cell Data.

    Tim Stuart;Andrew Butler;Paul Hoffman;Christoph Hafemeister

  • Integrating single-cell transcriptomic data across different conditions, technologies, and species.

    Andrew Butler;Paul Hoffman;Peter Smibert;Efthymia Papalexi

  • Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

    Evan Z. Macosko;Evan Z. Macosko;Anindita Basu;Anindita Basu;Rahul Satija;Rahul Satija;James Nemesh;James Nemesh

  • Spatial reconstruction of single-cell gene expression data

    Rahul Satija;Jeffrey A Farrell;David Gennert;Alexander F Schier

  • Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

    Christoph Hafemeister;Rahul Satija

  • Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors.

    Alexandra Chloé Villani;Alexandra Chloé Villani;Rahul Satija;Rahul Satija;Gary Reynolds;Siranush Sarkizova

  • Simultaneous epitope and transcriptome measurement in single cells.

    Marlon Stoeckius;Christoph Hafemeister;William Stephenson;Brian Houck-Loomis

  • The Human Cell Atlas

    Aviv Regev;Aviv Regev;Aviv Regev;Sarah A Teichmann;Sarah A Teichmann;Sarah A Teichmann;Eric S Lander;Eric S Lander;Eric S Lander;Ido Amit

  • Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

    Alex K. Shalek;Rahul Satija;Xian Adiconis;Rona S. Gertner

  • Single-cell RNA sequencing to explore immune cell heterogeneity.

    Efthymia Papalexi;Rahul Satija

  • Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

    Alex K. Shalek;Rahul Satija;Joe Shuga;John J. Trombetta

  • The genome of the sea urchin Strongylocentrotus purpuratus.

    Erica Sodergren;George M. Weinstock;Eric H. Davidson;R. Andrew Cameron

  • Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites

    Schraga Schwartz;Maxwell R. Mumbach;Marko Jovanovic;Tim Wang;Tim Wang

  • Integrative single-cell analysis

    Tim Stuart;Rahul Satija

  • Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma

    Itay Tirosh;Andrew S. Venteicher;Andrew S. Venteicher;Christine Hebert;Christine Hebert;Leah E. Escalante;Leah E. Escalante

  • Single-cell chromatin state analysis with Signac.

    Tim Stuart;Avi Srivastava;Shaista Madad;Caleb A. Lareau

  • Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

    Schraga Schwartz;Douglas A. Bernstein;Maxwell R. Mumbach;Marko Jovanovic

  • Landscape of X chromosome inactivation across human tissues

    Taru Tukiainen;Taru Tukiainen;Alexandra-Chloé Villani;Alexandra-Chloé Villani;Angela Yen;Angela Yen;Manuel A. Rivas;Manuel A. Rivas;Manuel A. Rivas

  • Integrated analysis of multimodal single-cell data

    Yuhan Hao;Stephanie Hao;Erica Andersen-Nissen;William M. Mauck

Frequent Co-Authors

Aviv Regev
Aviv Regev Genentech
Nir Hacohen
Nir Hacohen Harvard University
Eric S. Lander
Eric S. Lander Broad Institute
Nir Yosef
Nir Yosef University of California, Berkeley
Hongkun Park
Hongkun Park Harvard University
John C. Marioni
John C. Marioni European Bioinformatics Institute
Schraga Schwartz
Schraga Schwartz Weizmann Institute of Science
Sarah A. Teichmann
Sarah A. Teichmann University of Cambridge

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