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Genetics
Germany
2024

D-Index & Metrics

Genetics

D-Index
99
Citations
77426
World Ranking
764
National Ranking
64

Research.com Recognitions

  • 2024 - Research.com Genetics in Germany Leader Award
  • 2023 - Research.com Genetics in Germany Leader Award

Overview

Oliver Stegle is affiliated with the German Cancer Research Center in Germany. Their research primarily spans the domain of Biochemistry, Genetics, and Molecular Biology, with a total of 255 publications in this field. Subfields explored in their work include Molecular Biology, Genetics, Cancer Research, Immunology, and Biophysics.

The main topics addressed in Stegle's research encompass:

  • Single-cell and spatial transcriptomics
  • Cancer Genomics and Diagnostics
  • Gene expression and cancer classification
  • CRISPR and Genetic Engineering
  • Genetic Associations and Epidemiology
  • Cell Image Analysis Techniques
  • Gene Regulatory Network Analysis

Oliver Stegle has authored numerous papers published in a range of scientific journals and platforms. Frequent venues for their publications include bioRxiv (Cold Spring Harbor Laboratory), Nature Communications, Genome Biology, Zenodo (CERN European Organization for Nuclear Research), and Nature Genetics.

Notable recent papers by Stegle or closely connected to their research include:

  • "Eleven grand challenges in single-cell data science," 2020, Genome Biology
  • "Cell2location maps fine-grained cell types in spatial transcriptomics," 2022, Nature Biotechnology
  • "MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data," 2020, Genome Biology
  • "Haplotype-resolved diverse human genomes and integrated analysis of structural variation," 2021, Science
  • "The Polygenic and Monogenic Basis of Blood Traits and Diseases," 2020, Cell

Their frequent coauthors indicate collaborative works with several researchers, with prominent partnerships featuring:

  • Marc Jan Bonder (35 joint works)
  • John C. Marioni (16 joint works)
  • Daniel D. Seaton (15 joint works)
  • Jan O. Korbel (13 joint works)
  • Omer Ali Bayraktar (13 joint works)

Best Publications

  • A global reference for human genetic variation.

    Adam Auton;Gonçalo R. Abecasis;David M. Altshuler;Richard M. Durbin

  • Pan-cancer analysis of whole genomes

    Peter J. Campbell;Gad Getz;Jan O. Korbel;Joshua M. Stuart

  • An integrated map of structural variation in 2,504 human genomes

    Peter H. Sudmant;Tobias Rausch;Eugene J. Gardner;Robert E. Handsaker;Robert E. Handsaker

  • Transcriptome and genome sequencing uncovers functional variation in humans

    Tuuli Lappalainen;Michael Sammeth;Marc R. Friedländer;Peter A. C. ‘t Hoen

  • Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

    Urmo Võsa;Annique Claringbould;Annique Claringbould;Harm-Jan Westra;Marc Jan Bonder

  • The Human Cell Atlas

    Aviv Regev;Aviv Regev;Aviv Regev;Sarah A Teichmann;Sarah A Teichmann;Sarah A Teichmann;Eric S Lander;Eric S Lander;Eric S Lander;Ido Amit

  • Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.

    Jonas Schulte-Schrepping;Nico Reusch;Daniela Paclik;Kevin Baßler

  • Deep learning for computational biology

    Christof Angermueller;Tanel Pärnamaa;Tanel Pärnamaa;Leopold Parts;Leopold Parts;Oliver Stegle

  • Eleven grand challenges in single-cell data science

    David Lähnemann;David Lähnemann;Johannes Köster;Johannes Köster;Ewa Szczurek;Davis J. McCarthy;Davis J. McCarthy

  • Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

    Oliver Stegle;Leopold Parts;Matias Piipari;John Winn

  • Computational and analytical challenges in single-cell transcriptomics

    Oliver Stegle;Sarah A. Teichmann;John C. Marioni

  • Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

    Florian Buettner;Kedar N Natarajan;Kedar N Natarajan;F Paolo Casale;Valentina Proserpio;Valentina Proserpio

  • Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

    Biola M Javierre;Oliver S Burren;Steven P Wilder;Roman Kreuzhuber

  • Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

    Sébastien A Smallwood;Heather J Lee;Heather J Lee;Christof Angermueller;Felix Krueger

  • Whole-genome sequencing of multiple Arabidopsis thaliana populations

    Jun Cao;Korbinian Schneeberger;Stephan Ossowski;Stephan Ossowski;Torsten Günther

  • A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

    Zhenqiang Su;Paweł P. Łabaj;Sheng Li;Jean Thierry-Mieg

  • A global reference for human genetic variation

    Adam Auton;Gonçalo R. Abecasis;David M. Altshuler;Richard M. Durbin

  • Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients.

    André Kahles;Kjong-Van Lehmann;Nora C Toussaint;Matthias Hüser

  • Multi-Omics Factor Analysis—a framework for unsupervised integration of multi-omics data sets

    Ricard Argelaguet;Britta Velten;Damien Arnol;Sascha Dietrich

  • Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

    Claude Becker;Jörg Hagmann;Jonas Müller;Daniel Koenig

Frequent Co-Authors

John C. Marioni
John C. Marioni European Bioinformatics Institute
Wolf Reik
Wolf Reik Babraham Institute
Marc Jan Bonder
Marc Jan Bonder University of Groningen
Karsten M. Borgwardt
Karsten M. Borgwardt Max Planck Institute of Biochemistry
Sarah A. Teichmann
Sarah A. Teichmann University of Cambridge
Gunnar Rätsch
Gunnar Rätsch ETH Zurich
Ewan Birney
Ewan Birney European Molecular Biology Laboratory
Ludovic Vallier
Ludovic Vallier University of Cambridge
Richard Durbin
Richard Durbin University of Cambridge
Willem H. Ouwehand
Willem H. Ouwehand University of Cambridge

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