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D-Index & Metrics

Biology and Biochemistry

D-Index
64
Citations
28490
World Ranking
9437
National Ranking
249

Overview

Marc Jan Bonder is affiliated with the University of Groningen in the Netherlands and works primarily within the field of Biochemistry, Genetics and Molecular Biology. Their research output spans 133 publications in this area, with a focus on Molecular Biology, Genetics, Immunology, Cancer Research, and Plant Science. The subfield of Molecular Biology accounts for the majority of their work, followed by significant contributions to Genetics and Immunology.

The research topics covered by Marc Jan Bonder include:

  • Epigenetics and DNA Methylation
  • Single-cell and spatial transcriptomics
  • Genomics and Phylogenetic Studies
  • Genetic Associations and Epidemiology
  • Genomics and Chromatin Dynamics
  • RNA modifications and cancer
  • Chromosomal and Genetic Variations

Their recent publications demonstrate a focus on large-scale genetic and genomic analyses. These include:

  • Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression, 2021, Nature Genetics
  • Large-scale association analyses identify host factors influencing human gut microbiome composition, 2021, Nature Genetics
  • Haplotype-resolved diverse human genomes and integrated analysis of structural variation, 2021, Science
  • Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression, 2020, Nature Communications
  • Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation, 2021, Nature Genetics

Publication venues frequently featuring Marc Jan Bonder's work include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Zenodo (CERN European Organization for Nuclear Research)
  • Nature Genetics
  • Nature

Collaborative work is a significant component of this researcher's career. Their most frequent co-authors are:

  • Oliver Stegle
  • Lude Franke
  • Jenny van Dongen
  • Dorret I. Boomsma
  • Peter A.C. 't Hoen

Best Publications

  • Population-level analysis of gut microbiome variation

    Gwen Falony;Marie Joossens;Marie Joossens;Sara Vieira-Silva;Jun Wang

  • Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity.

    Alexandra Zhernakova;Alexander Kurilshikov;Marc Jan Bonder;Ettje F. Tigchelaar

  • Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

    Urmo Võsa;Annique Claringbould;Annique Claringbould;Harm-Jan Westra;Marc Jan Bonder

  • Large-scale association analyses identify host factors influencing human gut microbiome composition

    Alexander Kurilshikov;Carolina Medina-Gomez;Rodrigo Bacigalupe;Djawad Radjabzadeh

  • Proton pump inhibitors affect the gut microbiome

    Floris Imhann;Marc Jan Bonder;Arnau Vich Vila;Jingyuan Fu

  • Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

    Melanie Schirmer;Melanie Schirmer;Sanne P. Smeekens;Hera Vlamakis;Martin Jaeger

  • The effect of host genetics on the gut microbiome

    Marc Jan Bonder;Alexander Kurilshikov;Alexander Kurilshikov;Ettje F Tigchelaar;Zlatan Mujagic

  • Epigenome-wide association study of body mass index, and the adverse outcomes of adiposity

    Simone Wahl;Alexander Drong;Benjamin Lehne;Marie Loh;Marie Loh;Marie Loh

  • Haplotype-resolved diverse human genomes and integrated analysis of structural variation.

    Peter Ebert;Peter A. Audano;Qihui Zhu;Bernardo Rodriguez-Martin

  • Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes

    Angli Xue;Yang Wu;Zhihong Zhu;Futao Zhang

  • Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

    Floris Imhann;Arnau Vich Vila;Marc Jan Bonder;Jingyuan Fu

  • The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids

    Jingyuan Fu;Marc Jan Bonder;María Carmen Cenit;Ettje F. Tigchelaar

  • Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome

    Arnau Vich Vila;Floris Imhann;Valerie Collij;Soesma A Jankipersadsing

  • Unraveling the polygenic architecture of complex traits using blood eQTL metaanalysis

    Võsa U;Claringbould A;Westra H;Bonder Mj

  • Disease variants alter transcription factor levels and methylation of their binding sites.

    Marc Jan Bonder;René Luijk;Daria V Zhernakova;Matthijs Moed

  • Identification of context-dependent expression quantitative trait loci in whole blood

    Daria V Zhernakova;Patrick Deelen;Martijn Vermaat;Maarten van Iterson

  • Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA.

    Rudolf S. N. Fehrmann;Ritsert C. Jansen;Jan H. Veldink;Harm-Jan Westra

  • Genetic and environmental influences interact with age and sex in shaping the human methylome

    Jenny van Dongen;Michel G. Nivard;Gonneke Willemsen;Jouke-Jan Hottenga

  • Multi-tissue DNA methylation age predictor in mouse

    Thomas M. Stubbs;Marc Jan Bonder;Anne-Katrien Stark;Felix Krueger

  • Proton pump inhibitors affect the gut microbiome

    F. Imhann;M. J. Bonder;A. Vich Vila;J. Fu

Frequent Co-Authors

Oliver Stegle
Oliver Stegle German Cancer Research Center
Cisca Wijmenga
Cisca Wijmenga University Medical Center Groningen
Lude Franke
Lude Franke University Medical Center Groningen
Alexandra Zhernakova
Alexandra Zhernakova University Medical Center Groningen
Jingyuan Fu
Jingyuan Fu University Medical Center Groningen
Patrick Deelen
Patrick Deelen University Medical Center Groningen
André G. Uitterlinden
André G. Uitterlinden Erasmus University Rotterdam
Dorret I. Boomsma
Dorret I. Boomsma Vrije Universiteit Amsterdam
Morris A. Swertz
Morris A. Swertz University Medical Center Groningen
Alexander Kurilshikov
Alexander Kurilshikov University of Groningen

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