D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics and Molecular Biology D-index 49 Citations 26,247 99 World Ranking 3868 National Ranking 1826

Research.com Recognitions

Awards & Achievements

2014 - Fellow of Alfred P. Sloan Foundation

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • DNA
  • Genetics

Anshul Kundaje mostly deals with Genetics, Computational biology, Chromatin, Human genome and ENCODE. His study involves Gene, Epigenomics, Histone, Regulation of gene expression and Genome-wide association study, a branch of Genetics. His Computational biology study incorporates themes from Lineage, ATAC-seq, Transcription factor and Functional genomics, Genomics.

His studies in Chromatin integrate themes in fields like Stem cell, Regulome and Hox gene. His Human genome study improves the overall literature in Genome. His work carried out in the field of ENCODE brings together such families of science as DNase-Seq and Sequence analysis.

His most cited work include:

  • Integrative analysis of 111 reference human epigenomes (3776 citations)
  • An integrated encyclopedia of DNA elements in the human genome (2642 citations)
  • ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia (1269 citations)

What are the main themes of his work throughout his whole career to date?

Anshul Kundaje spends much of his time researching Computational biology, Genetics, Chromatin, Gene and Genome. His Computational biology research includes themes of Transcription factor, Regulatory sequence, ENCODE, Genomics and DNA sequencing. His Genomics research includes elements of Quantitative trait locus and Deep learning, Artificial intelligence.

His work in Genetics addresses issues such as Evolutionary biology, which are connected to fields such as Model organism. The various areas that Anshul Kundaje examines in his Chromatin study include Epigenomics, DNA methylation, Histone and Cell biology. Anshul Kundaje combines subjects such as Annotation, CRISPR and Human genetics with his study of Genome.

He most often published in these fields:

  • Computational biology (45.63%)
  • Genetics (40.29%)
  • Chromatin (33.01%)

What were the highlights of his more recent work (between 2019-2021)?

  • Computational biology (45.63%)
  • Gene (26.21%)
  • Chromatin (33.01%)

In recent papers he was focusing on the following fields of study:

Computational biology, Gene, Chromatin, Genome and Genomics are his primary areas of study. His Computational biology research incorporates themes from CRISPR, DNA methylation, Transcription factor, Tissue-Specific Splicing and Genetic variants. His Chromatin study integrates concerns from other disciplines, such as Gene expression, ENCODE, Histone, Regulation of gene expression and Epigenetics.

His research integrates issues of Housekeeping gene, Human genome and Functional genomics in his study of ENCODE. His work deals with themes such as Biological pathway and Function, which intersect with Genome. His Genomics research is multidisciplinary, incorporating perspectives in Deep learning, Syntax and Artificial intelligence.

Between 2019 and 2021, his most popular works were:

  • Expanded encyclopaedias of DNA elements in the human and mouse genomes (141 citations)
  • The Human Tumor Atlas Network: Charting Tumor Transitions Across Space and Time at Single-Cell Resolution (65 citations)
  • CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities. (52 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • DNA
  • Genetics

Anshul Kundaje mainly focuses on Computational biology, Chromatin, Genomics, Epigenomics and Transcription factor. Anshul Kundaje has included themes like Cancer, CRISPR, Activator, Repressor and Gene silencing in his Computational biology study. His study in Chromatin is interdisciplinary in nature, drawing from both Genome, ENCODE and DNA methylation.

He has researched Genome in several fields, including Regulation of gene expression and Housekeeping gene, Gene expression. His Epigenomics research incorporates elements of Genome-wide association study, Locus and Haplotype. Genetics covers he research in Haplotype.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje;Wouter Meuleman;Wouter Meuleman;Jason Ernst.
Nature (2015)

4957 Citations

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins.
PMC (2012)

2767 Citations

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt;Georgi K. Marinov;Anshul Kundaje;Pouya Kheradpour.
Genome Research (2012)

1905 Citations

Architecture of the human regulatory network derived from ENCODE data

Mark B Gerstein;Anshul Kundaje;Manoj Hariharan;Stephen G Landt.
Nature (2012)

1553 Citations

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

Richard M. Myers;John Stamatoyannopoulos;Michael Snyder;Ian Dunham.
PLOS Biology (2011)

1331 Citations

A comparative encyclopedia of DNA elements in the mouse genome

Feng Yue;Feng Yue;Yong Cheng;Alessandra Breschi;Jeff Vierstra.
Nature (2014)

1220 Citations

Opportunities and obstacles for deep learning in biology and medicine.

Travers Ching;Daniel S. Himmelstein;Brett K. Beaulieu-Jones;Alexandr A. Kalinin.
Journal of the Royal Society Interface (2018)

1216 Citations

Learning important features through propagating activation differences

Avanti Shrikumar;Peyton Greenside;Anshul Kundaje.
international conference on machine learning (2017)

1071 Citations

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.

Jie Wang;Jiali Zhuang;Sowmya Iyer;Sowmya Iyer;XinYing Lin.
Genome Research (2012)

972 Citations

Integrative annotation of chromatin elements from ENCODE data

Michael M. Hoffman;Jason Ernst;Jason Ernst;Jason Ernst;Steven P. Wilder;Anshul Kundaje;Anshul Kundaje.
Nucleic Acids Research (2013)

746 Citations

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