World's Best Scientists 2026 revealed!
Emmanuel Barillot

Emmanuel Barillot

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Computer Science
France
2025
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Genetics
France
2024

D-Index & Metrics

Computer Science

D-Index
58
Citations
18002
World Ranking
3561
National Ranking
59

Genetics

D-Index
75
Citations
24639
World Ranking
1890
National Ranking
82

Research.com Recognitions

  • 2025 - Research.com Computer Science in France Leader Award
  • 2024 - Research.com Genetics in France Leader Award
  • 2024 - Research.com Genetics and Molecular Biology in France Leader Award
  • 2022 - Research.com Computer Science in France Leader Award

Overview

Emmanuel Barillot is affiliated with the Institute Curie in France. Their research primarily spans the fields of Biochemistry, Genetics and Molecular Biology, and Medicine, with a focused subfield presence in Molecular Biology, Computational Theory and Mathematics, Modeling and Simulation, Oncology, and Pulmonary and Respiratory Medicine.

Their work covers a variety of main topics, such as Bioinformatics and Genomic Networks, Gene Regulatory Network Analysis, Computational Drug Discovery Methods, Mathematical Biology Tumor Growth, Single-cell and Spatial Transcriptomics, Microbial Metabolic Engineering and Bioproduction, and Cell Image Analysis Techniques.

Frequent publication venues for Emmanuel Barillot include bioRxiv (Cold Spring Harbor Laboratory), Cancers, Bioinformatics, Nature Communications, and PLoS Computational Biology.

Several recent papers reflect the scope of their research:

  • COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms (2020, Scientific Data)
  • Transcriptional Programs Define Intratumoral Heterogeneity of Ewing Sarcoma at Single-Cell Resolution (2020, Cell Reports)
  • Interpreting pathways to discover cancer driver genes with Moonlight (2020, Nature Communications)
  • A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression (2021, Nature Communications)
  • Patient-specific Boolean models of signalling networks guide personalised treatments (2022, eLife)

Emmanuel Barillot often collaborates with colleagues such as Laurence Calzone, Andreï Zinovyev, Vincent Noël, Inna Kuperstein, and Alfonso Valencia. These frequent co-authors have contributed to various publications alongside Barillot, reflecting a collaborative research approach.

Best Publications

  • Spatial partitioning of the regulatory landscape of the X-inactivation centre

    Elphège P. Nora;Bryan R. Lajoie;Edda G. Schulz;Luca Giorgetti;Luca Giorgetti;Luca Giorgetti

  • HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

    Nicolas Servant;Nelle Varoquaux;Nelle Varoquaux;Nelle Varoquaux;Bryan R. Lajoie;Eric Viara

  • Control-FREEC

    Valentina Boeva;Tatiana Popova;Kevin Bleakley;Pierre Chiche

  • A critical function for transforming growth factor-beta, interleukin 23 and proinflammatory cytokines in driving and modulating human T(H)-17 responses.

    Elisabetta Volpe;Nicolas Servant;Nicolas Servant;Nicolas Servant;Raphaël Zollinger;Raphaël Zollinger;Sofia I Bogiatzi;Sofia I Bogiatzi

  • Analysis of array CGH data: from signal ratio to gain and loss of DNA regions

    Philippe Hupé;Nicolas Stransky;Jean-Paul Thiery;François Radvanyi

  • Continuum of overlapping clones spanning the entire human chromosome 21q.

    Ilya Chumakov;Philippe Rigault;Sophie Guillou;Pierre Ougen

  • Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries

    Valentina Boeva;Valentina Boeva;Caroline Louis-Brennetot;Agathe Peltier;Simon Durand

  • LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation

    Jennifer C. Chow;Constance Ciaudo;Melissa J. Fazzari;Nathan Mise;Nathan Mise

  • XML, bioinformatics and data integration.

    Frédéric Achard;Guy Vaysseix;Emmanuel Barillot

  • miR-181a and miR-630 Regulate Cisplatin-Induced Cancer Cell Death

    Lorenzo Galluzzi;Eugenia Morselli;Ilio Vitale;Oliver Kepp

  • Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

    Valentina Boeva;Andrei Zinovyev;Kevin Bleakley;Jean-Philippe Vert

  • Classification of microarray data using gene networks

    Franck Rapaport;Franck Rapaport;Andrei Yu. Zinovyev;Marie Dutreix;Emmanuel Barillot

  • Germline BAP1 mutations predispose to renal cell carcinomas.

    Tatiana Popova;Lucie Hebert;Virginie Jacquemin;Sophie Gad

  • Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays

    Tatiana Popova;Elodie Manié;Dominique Stoppa-Lyonnet;Guillem Rigaill;Guillem Rigaill

  • Frequent PTEN genomic alterations and activated phosphatidylinositol 3-kinase pathway in basal-like breast cancer cells.

    Bérengère Marty;Virginie Maire;Eléonore Gravier;Guillem Rigaill;Guillem Rigaill

  • Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement

    Laurence Calzone;Laurence Calzone;Laurence Calzone;Laurent Tournier;Laurent Tournier;Laurent Tournier;Simon Fourquet;Simon Fourquet;Simon Fourquet;Denis Thieffry;Denis Thieffry

  • SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

    Bruno Zeitouni;Valentina Boeva;Isabelle Janoueix-Lerosey;Sophie Loeillet

  • Mapping the whole human genome by fingerprinting yeast artificial chromosomes.

    Christine Bellanné-Chantelot;Bruno Lacroix;Pierre Ougen;Alain Billault

  • Beta-catenin status in paediatric medulloblastomas: correlation of immunohistochemical expression with mutational status, genetic profiles, and clinical characteristics.

    Sarah Fattet;Sarah Fattet;Sarah Fattet;Christine Haberler;Christine Haberler;Christine Haberler;Patricia Legoix;Pascale Varlet

  • The oncogenic EWS-FLI1 protein binds in vivo GGAA microsatellite sequences with potential transcriptional activation function.

    Noëlle Guillon;Noëlle Guillon;Franck Tirode;Franck Tirode;Valentina Boeva;Valentina Boeva;Andrei Zynovyev;Andrei Zynovyev

Frequent Co-Authors

Andrei Zinovyev
Andrei Zinovyev Institute Curie
Laurence Calzone
Laurence Calzone PSL University
Olivier Delattre
Olivier Delattre PSL University
Edith Heard
Edith Heard Collège de France
Jean-Philippe Vert
Jean-Philippe Vert Google (United States)
Xavier Sastre-Garau
Xavier Sastre-Garau Institute Curie
Sergio Roman-Roman
Sergio Roman-Roman Institute Curie
Bernard Asselain
Bernard Asselain Institute Curie
Vassili Soumelis
Vassili Soumelis Université Paris Cité

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