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Andrei Zinovyev

Andrei Zinovyev

D-Index & Metrics

Engineering and Technology

D-Index
49
Citations
10118
World Ranking
4279
National Ranking
81

Overview

Andrei Zinovyev is affiliated with the Institute Curie in France, contributing extensively to the field of Biochemistry, Genetics, and Molecular Biology with a focused specialization in Molecular Biology. Their body of work spans a variety of related subfields, including Artificial Intelligence, Pulmonary and Respiratory Medicine, Oncology, and Biophysics.

The main topics of Zinovyev's research include single-cell and spatial transcriptomics, gene regulatory network analysis, bioinformatics and genomic networks, gene expression and cancer classification, cell image analysis techniques, microbial metabolic engineering and bioproduction, and computational drug discovery methods.

They have published multiple research papers in prominent scientific journals. Selected recent papers include:

  • Single-Cell Analysis Reveals Fibroblast Clusters Linked to Immunotherapy Resistance in Cancer, 2020, Cancer Discovery
  • Applications of single-cell and bulk RNA sequencing in onco-immunology, 2021, European Journal of Cancer
  • Transcriptional Programs Define Intratumoral Heterogeneity of Ewing Sarcoma at Single-Cell Resolution, 2020, Cell Reports
  • Interpreting pathways to discover cancer driver genes with Moonlight, 2020, Nature Communications
  • Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph, 2020, Entropy

Zinovyev frequently publishes in open-access and preprint venues, including Zenodo (CERN European Organization for Nuclear Research), bioRxiv (Cold Spring Harbor Laboratory), and arXiv (Cornell University). They have also contributed to journals such as Bioinformatics and npj Systems Biology and Applications.

Collaboration is an important element of Zinovyev's research, with consistent co-authors in various projects, including Emmanuel Barillot, Alexander N. Gorban, Laurence Calzone, Evgeny M. Mirkes, and Jonathan Bac.

Best Publications

  • Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

    Laurent Heirendt;Sylvain Arreckx;Thomas Pfau;Sebastián N. Mendoza

  • Principal Manifolds for Data Visualization and Dimension Reduction

    Alexander N. Gorban;Balzs Kgl;Donald C. Wunsch;Andrei Zinovyev

  • Codon adaptation index as a measure of dominating codon bias.

    Alessandra Carbone;Andrei Yu. Zinovyev;François Képès

  • The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.

    Alberto Noronha;Jennifer Modamio;Yohan Jarosz;Elisabeth Guerard

  • Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

    Valentina Boeva;Andrei Zinovyev;Kevin Bleakley;Jean-Philippe Vert

  • Classification of microarray data using gene networks

    Franck Rapaport;Franck Rapaport;Andrei Yu. Zinovyev;Marie Dutreix;Emmanuel Barillot

  • Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

    Huidong Chen;Luca Albergante;Luca Albergante;Jonathan Y. Hsu;Jonathan Y. Hsu;Caleb A. Lareau;Caleb A. Lareau

  • Mathematical Modelling of Cell-Fate Decision in Response to Death Receptor Engagement

    Laurence Calzone;Laurence Calzone;Laurence Calzone;Laurent Tournier;Laurent Tournier;Laurent Tournier;Simon Fourquet;Simon Fourquet;Simon Fourquet;Denis Thieffry;Denis Thieffry

  • Independent Component Analysis Uncovers the Landscape of the Bladder Tumor Transcriptome and Reveals Insights into Luminal and Basal Subtypes

    Anne Biton;Isabelle Bernard-Pierrot;Yinjun Lou;Clémentine Krucker

  • Constructive methods of invariant manifolds for kinetic problems

    Alexander N. Gorban;Iliya V. Karlin;Andrei Yu. Zinovyev

  • PRINCIPAL MANIFOLDS AND GRAPHS IN PRACTICE: FROM MOLECULAR BIOLOGY TO DYNAMICAL SYSTEMS

    Alexander N. Gorban;Andrei Yu. Zinovyev

  • Kinetic signatures of microRNA modes of action

    Nadya Morozova;Andrei Zinovyev;Andrei Zinovyev;Andrei Zinovyev;Nora Nonne;Nora Nonne;Linda-Louise Pritchard;Linda-Louise Pritchard

  • Computational Systems Biology of Cancer

    Emmanuel Barillot;Laurence Calzone;Philippe Hupe;Jean-Philippe Vert

  • A comprehensive modular map of molecular interactions in RB/E2F pathway

    Laurence Calzone;Laurence Calzone;Laurence Calzone;Amélie Gelay;Andrei Zinovyev;Andrei Zinovyev;Andrei Zinovyev;François Radvanyi

  • Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps

    Kuperstein I;Bonnet E;Bonnet E;Bonnet E;Nguyen Ha;Nguyen Ha;Nguyen Ha;Cohen D;Cohen D;Cohen D

  • Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration.

    David P. A. Cohen;Loredana Martignetti;Sylvie Robine;Emmanuel Barillot

  • MaBoSS 2.0: an environment for stochastic Boolean modeling.

    Gautier Stoll;Barthélémy Caron;Eric Viara;Aurélien Dugourd

  • Robust simplifications of multiscale biochemical networks

    Ovidiu Radulescu;Alexander N. Gorban;Andrei Yu. Zinovyev;Alain Lilienbaum;Alain Lilienbaum

  • Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut.

    Maia Chanrion;Inna Kuperstein;Cédric Barrière;Fatima El Marjou

  • Scikit-Dimension: A Python Package for Intrinsic Dimension Estimation

    Jonathan Bac;Evgeny M. Mirkes;Alexander N. Gorban;Ivan Tyukin

  • Principal Graphs and Manifolds

    Alexander N. Gorban;Andrei Yu. Zinovyev

  • Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0.

    Laurent Heirendt;Sylvain Arreckx;Thomas Pfau;Sebastián N. Mendoza

Frequent Co-Authors

Emmanuel Barillot
Emmanuel Barillot Institute Curie
Laurence Calzone
Laurence Calzone PSL University
Alexander N. Gorban
Alexander N. Gorban University of Leicester
Olivier Delattre
Olivier Delattre PSL University
Denis Thieffry
Denis Thieffry École Normale Supérieure
Ronan M. T. Fleming
Ronan M. T. Fleming Leiden University
Jean-Philippe Vert
Jean-Philippe Vert Google (United States)
Boris Zhivotovsky
Boris Zhivotovsky Karolinska Institute
Annick Harel-Bellan
Annick Harel-Bellan Centre national de la recherche scientifique, CNRS

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