World's Best Scientists 2026 revealed!

D-Index & Metrics

Molecular Biology

D-Index
45
Citations
9491
World Ranking
2850
National Ranking
1363

Ferhat Ay publication distribution in Molecular Biology in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Molecular Biology in 2026. The highlighted bar marks where Ferhat Ay sits on this spectrum.

47–56 publications: 7 scientists 57–66 publications: 17 scientists 67–76 publications: 65 scientists 77–86 publications: 90 scientists 87–96 publications: 125 scientists 97–106 publications: 131 scientists 107–116 publications: 162 scientists 117–126 publications: 177 scientists 127–136 publications: 158 scientists 137–146 publications: 158 scientists 147–156 publications: 146 scientists 157–166 publications: 159 scientists 167–176 publications: 131 scientists 177–186 publications: 110 scientists 187–196 publications: 112 scientists 197–206 publications: 100 scientists 207–216 publications: 89 scientists 217–226 publications: 98 scientists 227–236 publications: 74 scientists 237–246 publications: 72 scientists 247–256 publications: 63 scientists 257–266 publications: 53 scientists 267–276 publications: 54 scientists 277–286 publications: 49 scientists 287–296 publications: 52 scientists 297–306 publications: 43 scientists 307–316 publications: 46 scientists 317–326 publications: 41 scientists 327–336 publications: 42 scientists 337–346 publications: 31 scientists 347–356 publications: 28 scientists 357–366 publications: 29 scientists 367–376 publications: 26 scientists 377–386 publications: 24 scientists 387–396 publications: 24 scientists 397–406 publications: 14 scientists 407–416 publications: 13 scientists 417–426 publications: 20 scientists 427–436 publications: 12 scientists 437–446 publications: 20 scientists 447–456 publications: 11 scientists 457–466 publications: 10 scientists 467–476 publications: 14 scientists 477–486 publications: 14 scientists 487–496 publications: 10 scientists 497–506 publications: 13 scientists 507–516 publications: 13 scientists 517–526 publications: 2 scientists 527–536 publications: 4 scientists 537–546 publications: 6 scientists 547–556 publications: 8 scientists 557–563 publications: 6 scientists 564+ publications: 100 scientists
47 publications 564+

This scientist: 146 publications — 35th percentile

35% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 564 publications or more.

Ferhat Ay D-index placement in Molecular Biology in 2026

The chart shows the D-index (discipline H-index) distribution of Molecular Biology scientists ranked by Research.com in 2026. The highlighted bar marks where Ferhat Ay sits on this spectrum.

40–41 D-Index: 36 scientists 42–43 D-Index: 101 scientists 44–45 D-Index: 115 scientists 46–47 D-Index: 121 scientists 48–49 D-Index: 118 scientists 50–51 D-Index: 130 scientists 52–53 D-Index: 106 scientists 54–55 D-Index: 116 scientists 56–57 D-Index: 113 scientists 58–59 D-Index: 129 scientists 60–61 D-Index: 120 scientists 62–63 D-Index: 105 scientists 64–65 D-Index: 131 scientists 66–67 D-Index: 95 scientists 68–69 D-Index: 97 scientists 70–71 D-Index: 106 scientists 72–73 D-Index: 83 scientists 74–75 D-Index: 89 scientists 76–77 D-Index: 77 scientists 78–79 D-Index: 70 scientists 80–81 D-Index: 73 scientists 82–83 D-Index: 60 scientists 84–85 D-Index: 48 scientists 86–87 D-Index: 45 scientists 88–89 D-Index: 50 scientists 90–91 D-Index: 31 scientists 92–93 D-Index: 51 scientists 94–95 D-Index: 43 scientists 96–97 D-Index: 38 scientists 98–99 D-Index: 39 scientists 100–101 D-Index: 41 scientists 102–103 D-Index: 29 scientists 104–105 D-Index: 33 scientists 106–107 D-Index: 35 scientists 108–109 D-Index: 20 scientists 110–111 D-Index: 38 scientists 112–113 D-Index: 19 scientists 114–115 D-Index: 28 scientists 116–117 D-Index: 13 scientists 118–119 D-Index: 23 scientists 120–121 D-Index: 16 scientists 122–123 D-Index: 15 scientists 124–125 D-Index: 11 scientists 126–127 D-Index: 21 scientists 128–129 D-Index: 7 scientists 130–131 D-Index: 13 scientists 132–133 D-Index: 14 scientists 134–135 D-Index: 17 scientists 136–137 D-Index: 9 scientists 138–139 D-Index: 8 scientists 140–141 D-Index: 16 scientists 142–143 D-Index: 7 scientists 144 D-Index: 7 scientists 145+ D-Index: 100 scientists
40 D-Index 145+

This scientist: 45 D-Index — 8th percentile

8% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 145 D-Index or more.

Overview

Ferhat Ay is affiliated with the La Jolla Institute For Allergy & Immunology in the United States. Their research spans significant areas within biochemistry, genetics, molecular biology, medicine, and immunology and microbiology. Their publication record includes 117 contributions in Biochemistry, Genetics and Molecular Biology, 60 in Medicine, and 56 in Immunology and Microbiology.

The scientist's work covers numerous subfields such as molecular biology, immunology, cancer research, genetics, and infectious diseases. Their primary topics of investigation include genomics and chromatin dynamics, immune cell function and interaction, single-cell and spatial transcriptomics, bioinformatics and genomic networks, T-cell and B-cell immunology, epigenetics and DNA methylation, and RNA research and splicing.

Frequent co-authors collaborating with Ferhat Ay include Daniela Salgado Figueroa (21 publications), Abhijit Chakraborty (19 publications), Pandurangan Vijayanand (14 publications), Sourya Bhattacharyya (14 publications), and Joaquin Reyna (13 publications).

Most of their work has appeared in several key publication venues, particularly bioRxiv (Cold Spring Harbor Laboratory) with 25 papers, The Journal of Immunology (6 papers), Genome Biology (5 papers), Nature Communications (5 papers), and Science Immunology (4 papers).

Selected recent papers by Ferhat Ay include:

  • Imbalance of Regulatory and Cytotoxic SARS-CoV-2-Reactive CD4+ T Cells in COVID-19, 2020, Cell
  • Severely ill patients with COVID-19 display impaired exhaustion features in SARS-CoV-2-reactive CD8 + T cells, 2021, Science Immunology
  • Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2, 2020, Nature Protocols
  • Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation, 2020, Genome Biology
  • Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants, 2020, Nature Genetics

Best Publications

  • Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

    Sushmita Roy;Jason Ernst;Peter V. Kharchenko;Pouya Kheradpour

  • Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

    Ferhat Ay;Timothy L. Bailey;William Stafford Noble

  • Integrative detection and analysis of structural variation in cancer genomes

    Jesse R. Dixon;Jie Xu;Vishnu Dileep;Ye Zhan

  • Identification of significant chromatin contacts from HiChIP data by FitHiChIP.

    Sourya Bhattacharyya;Vivek Chandra;Pandurangan Vijayanand;Pandurangan Vijayanand;Pandurangan Vijayanand;Ferhat Ay;Ferhat Ay

  • Bipartite structure of the inactive mouse X chromosome.

    Xinxian Deng;Wenxiu Ma;Vijay Ramani;Andrew Hill

  • Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer.

    James Clarke;James Clarke;Bharat Panwar;Ariel Madrigal;Divya Singh

  • Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

    Ferhat Ay;Evelien M. Bunnik;Nelle Varoquaux;Sebastiaan M. Bol

  • Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes

    Wenxiu Ma;Ferhat Ay;Choli Lee;Gunhan Gulsoy

  • Topologically-associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication timing program

    Vishnu Dileep;Ferhat Ay;Jiao Sima;Daniel L. Vera

  • Analysis methods for studying the 3D architecture of the genome

    Ferhat Ay;Ferhat Ay;William S. Noble

  • Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication

    Jiao Sima;Abhijit Chakraborty;Vishnu Dileep;Marco Michalski

  • Measuring the reproducibility and quality of Hi-C data

    Galip Gürkan Yardımcı;Hakan Ozadam;Michael E.G. Sauria;Oana Ursu

  • Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

    Daniel Marbach;Sushmita Roy;Ferhat Ay;Patrick E. Meyer

  • A predictive modeling approach for cell line-specific long-range regulatory interactions

    Sushmita Roy;Alireza Fotuhi Siahpirani;Deborah Chasman;Sara Knaack

  • 17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells.

    Benjamin Joachim Schmiedel;Grégory Seumois;Daniela Samaniego-Castruita;Justin Cayford

  • Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants

    Vivek Chandra;Sourya Bhattacharyya;Benjamin J. Schmiedel;Ariel Madrigal

  • Comprehensive identification and analysis of human accelerated regulatory DNA

    Rachel M. Gittelman;Enna Hun;Ferhat Ay;Jennifer Madeoy

  • Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.

    Evelien M. Bunnik;Evelien M. Bunnik;Kate B. Cook;Nelle Varoquaux;Gayani Batugedara

  • Scalable Steady State Analysis of Boolean Biological Regulatory Networks

    Ferhat Ay;Fei Xu;Tamer Kahveci

  • Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

    Maxwell W. Libbrecht;Ferhat Ay;Michael M. Hoffman;Michael M. Hoffman;David M. Gilbert

Frequent Co-Authors

Pandurangan Vijayanand
Pandurangan Vijayanand La Jolla Institute For Allergy & Immunology
William Stafford Noble
William Stafford Noble University of Washington
Christian H. Ottensmeier
Christian H. Ottensmeier University of Southampton
Grégory Seumois
Grégory Seumois La Jolla Institute For Allergy & Immunology
Jean-Philippe Vert
Jean-Philippe Vert Google (United States)
David M. Gilbert
David M. Gilbert Florida State University
Stefan Mundlos
Stefan Mundlos Max Planck Society
Ji-Fan Hu
Ji-Fan Hu Stanford University
Karine G. Le Roch
Karine G. Le Roch University of California, Riverside
Job Dekker
Job Dekker University of Massachusetts Chan Medical School

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