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Boris N. Kholodenko

Boris N. Kholodenko

D-Index & Metrics

Biology and Biochemistry

D-Index
70
Citations
19017
World Ranking
6956
National Ranking
33

Research.com Recognitions

  • 2018 - Member of the Royal Irish Academy

Overview

Boris N. Kholodenko is a researcher affiliated with University College Dublin in Ireland. Their academic work spans multiple domains within biochemistry, genetics, molecular biology, and medicine.

The scientist has produced research in various venues, including bioRxiv (Cold Spring Harbor Laboratory), where they have published 8 papers. Other frequent publication venues include eLife, Cell Reports, Science Advances, and Cancers.

Their main fields of study comprise biochemistry, genetics, and molecular biology with 45 publications, alongside medicine with 18 publications. Subfields of research include molecular biology, immunology, cell biology, computational theory and mathematics, and cancer research.

The central topics addressed in their work cover computational drug discovery methods, gene regulatory network analysis, bioinformatics and genomic networks, melanoma and MAPK pathways, interferon and immune responses, single-cell and spatial transcriptomics, and protein kinase regulation and GTPase signaling.

Recent papers authored or co-authored by Boris N. Kholodenko include:

  • Acute Phase Response as a Biological Mechanism-of-Action of (Nano)particle-Induced Cardiovascular Disease, 2020, Small
  • Control of cell state transitions, 2022, Nature
  • Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D, 2020, Nature Communications
  • Periodic propagating waves coordinate RhoGTPase network dynamics at the leading and trailing edges during cell migration, 2020, eLife
  • A systematic analysis of signaling reactivation and drug resistance, 2021, Cell Reports

Frequent collaborators who have co-authored multiple works with them include Oleksii S. Rukhlenko, Walter Kölch, Vadim Zhernovkov, Shivraj M. Yabaji, and Igor Kramnik.

Boris N. Kholodenko was recognized as a Member of the Royal Irish Academy in 2018.

Best Publications

  • Cell-signalling dynamics in time and space

    Boris N. Kholodenko

  • Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades

    Nick I. Markevich;Jan B. Hoek;Boris N. Kholodenko

  • Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades.

    Boris N. Kholodenko

  • Quantification of Short Term Signaling by the Epidermal Growth Factor Receptor

    Boris N. Kholodenko;Oleg V. Demin;Gisela Moehren;Jan B. Hoek

  • Signalling ballet in space and time

    Boris N. Kholodenko;John F. Hancock;Walter Kolch

  • Cross-talk between mitogenic Ras/MAPK and survival PI3K/Akt pathways: a fine balance.

    Edita Aksamitiene;Anatoly B. Kiyatkin;Boris N. Kholodenko;Boris N. Kholodenko

  • Untangling the wires: A strategy to trace functional interactions in signaling and gene networks

    Boris N. Kholodenko;Anatoly Kiyatkin;Frank J. Bruggeman;Eduardo Sontag

  • The dynamic control of signal transduction networks in cancer cells.

    Walter Kolch;Melinda Halasz;Marina Granovskaya;Boris N. Kholodenko

  • Ligand‐dependent responses of the ErbB signaling network: experimental and modeling analyses

    Marc R Birtwistle;Marc R Birtwistle;Mariko Hatakeyama;Noriko Yumoto;Babatunde A Ogunnaike

  • The Mammalian MAPK/ERK Pathway Exhibits Properties of a Negative Feedback Amplifier

    Oliver E. Sturm;Richard Orton;Joan Grindlay;Marc Birtwistle

  • Quantitative analysis of signaling networks

    Herbert M. Sauro;Boris N. Kholodenko

  • Why cytoplasmic signalling proteins should be recruited to cell membranes

    Boris N. Kholodenko;Jan B. Hoek;Hans V. Westerhoff

  • Ligand-Specific c-Fos Expression Emerges from the Spatiotemporal Control of ErbB Network Dynamics

    Takashi Nakakuki;Marc R. Birtwistle;Marc R. Birtwistle;Marc R. Birtwistle;Yuko Saeki;Noriko Yumoto

  • Systems‐level interactions between insulin–EGF networks amplify mitogenic signaling

    Nikolay Borisov;Edita Aksamitiene;Anatoly Kiyatkin;Stefan Legewie

  • Spatial gradients of cellular phospho-proteins.

    Guy C. Brown;Boris N. Kholodenko

  • Frequency modulation of ERK activation dynamics rewires cell fate

    Hyunryul Ryu;Minhwan Chung;Maciej Dobrzyński;Dirk Fey

  • Scaffolding protein Grb2-associated binder 1 sustains epidermal growth factor-induced mitogenic and survival signaling by multiple positive feedback loops.

    Anatoly Kiyatkin;Edita Aksamitiene;Nick I. Markevich;Nikolay M. Borisov

  • Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data

    Eduardo Sontag;Anatoly Kiyatkin;Boris N. Kholodenko

  • Evaluating strategies to normalise biological replicates of Western blot data.

    Andrea Degasperi;Marc R. Birtwistle;Natalia Volinsky;Jens Rauch

  • Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors.

    Boris N Kholodenko

Frequent Co-Authors

Hans V. Westerhoff
Hans V. Westerhoff Vrije Universiteit Amsterdam
Walter Kolch
Walter Kolch University College Dublin
Jan B. Hoek
Jan B. Hoek Thomas Jefferson University
Marta Cascante
Marta Cascante University of Barcelona
Alex von Kriegsheim
Alex von Kriegsheim University of Edinburgh
Peter Ruhdal Jensen
Peter Ruhdal Jensen Technical University of Denmark
Jacky L. Snoep
Jacky L. Snoep Stellenbosch University
Guy C. Brown
Guy C. Brown University of Cambridge
Douwe Molenaar
Douwe Molenaar Vrije Universiteit Amsterdam
Herbert M. Sauro
Herbert M. Sauro University of Washington

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