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Genetics

D-Index
97
Citations
44309
World Ranking
830
National Ranking
417

Molecular Biology

D-Index
97
Citations
44309
World Ranking
585
National Ranking
323

Overview

Michael J. MacCoss is affiliated with the University of Washington in the United States. Their research primarily spans Biochemistry, Genetics and Molecular Biology, and Chemistry, with a significant focus on Molecular Biology and Spectroscopy as key subfields.

The main topics covered by their work include:

  • Advanced Proteomics Techniques and Applications
  • Mass Spectrometry Techniques and Applications
  • Metabolomics and Mass Spectrometry Studies
  • Adipose Tissue and Metabolism
  • Alzheimer's disease research and treatments
  • RNA and protein synthesis mechanisms
  • Genetics, Aging, and Longevity in Model Organisms

Michael J. MacCoss has contributed to numerous publications, with frequent appearances in the following venues:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Journal of Proteome Research
  • Nature Methods
  • GeroScience
  • Clinical Chemistry

Notable recent publications include:

  • The ProteomeXchange consortium at 10 years: 2023 update, 2022, Nucleic Acids Research
  • Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics, 2020, Journal of Proteome Research
  • Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries, 2020, Molecular & Cellular Proteomics
  • Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition, 2023, Journal of Proteome Research
  • Proteogenomic data and resources for pan-cancer analysis, 2023, Cancer Cell

Their collaborative network includes frequent co-authors such as:

  • Gennifer E. Merrihew
  • Brendan MacLean
  • Richard S. Johnson
  • Michael Riffle
  • William Stafford Noble

Best Publications

  • Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

    Brendan MacLean;Daniela M. Tomazela;Nicholas Shulman;Matthew Chambers

  • A cross-platform toolkit for mass spectrometry and proteomics

    Matthew C Chambers;Brendan Maclean;Robert Burke;Dario Amodei

  • An integrated encyclopedia of DNA elements in the human genome

    Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins

  • Aminoglycoside antibiotics induce bacterial biofilm formation

    Lucas R. Hoffman;David A. D'Argenio;Michael J. MacCoss;Zhaoying Zhang

  • Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

    Mark B. Gerstein;Zhi John Lu;Eric L. Van Nostrand;Chao Cheng

  • How many human proteoforms are there

    Ruedi Aebersold;Jeffrey N. Agar;I. Jonathan Amster;Mark S. Baker

  • An expansive human regulatory lexicon encoded in transcription factor footprints

    Shane Neph;Jeff Vierstra;Andrew B. Stergachis;Alex P. Reynolds

  • Using iRT, a normalized retention time for more targeted measurement of peptides

    Claudia Escher;Lukas Reiter;Brendan MacLean;Reto Ossola

  • The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics.

    Lindsay K. Pino;Brian C. Searle;James G. Bollinger;Brook Nunn

  • Assigning significance to peptides identified by tandem mass spectrometry using decoy databases.

    Lukas Käll;John D. Storey;Michael J. MacCoss;William Stafford Noble

  • The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.

    Eric W. Deutsch;Nuno Bandeira;Nuno Bandeira;Vagisha Sharma;Yasset Pérez-Riverol

  • Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery.

    Stephane Angers;Ti Li;Xianhua Yi;Michael J. MacCoss

  • Shotgun identification of protein modifications from protein complexes and lens tissue

    Michael J. MacCoss;W. Hayes McDonald;Anita Saraf;Rovshan Sadygov

  • Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry

    Brian C. Searle;Lindsay K. Pino;Jarrett D. Egertson;Ying S. Ting

  • Overexpression of Catalase Targeted to Mitochondria Attenuates Murine Cardiac Aging

    Dao Fu Dai;Luis Fernando Santana;Marc Vermulst;Daniela M. Tomazela

  • Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline APPLICATION TO PROTEIN ACETYLATION AND PHOSPHORYLATION

    Birgit Schilling;Matthew J. Rardin;Brendan X. MacLean;Anna M. Zawadzka

  • Wilms Tumor Suppressor WTX Negatively Regulates WNT/β-Catenin Signaling

    Michael B. Major;Nathan D. Camp;Jason D. Berndt;Xianhua Yi

  • The PINK1-Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo.

    Evelyn S. Vincow;Gennifer Merrihew;Ruth E. Thomas;Nicholas J. Shulman

  • The KLHL12-Cullin-3 ubiquitin ligase negatively regulates the Wnt-β-catenin pathway by targeting Dishevelled for degradation

    Stephane Angers;Chris J. Thorpe;Travis L. Biechele;Seth J. Goldenberg

  • MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications

    W. Hayes McDonald;David L. Tabb;David L. Tabb;Rovshan G. Sadygov;Michael J. MacCoss

Frequent Co-Authors

Brendan MacLean
Brendan MacLean University of Washington
William Stafford Noble
William Stafford Noble University of Washington
Richard J. Johnson
Richard J. Johnson University of Colorado Denver
Peter S. Rabinovitch
Peter S. Rabinovitch University of Washington
Stewart M. Gray
Stewart M. Gray Cornell University
Trisha N. Davis
Trisha N. Davis University of Washington
John R. Yates
John R. Yates Scripps Research Institute
Willie J. Swanson
Willie J. Swanson University of Washington
Michael Snyder
Michael Snyder Stanford University
Chao Cheng
Chao Cheng Baylor College of Medicine

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