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Lennart Martens

Lennart Martens

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Engineering and Technology
Belgium
2026

D-Index & Metrics

Engineering and Technology

D-Index
76
Citations
24932
World Ranking
692
National Ranking
8

Research.com Recognitions

  • 2026 - Research.com Engineering and Technology in Belgium Leader Award
  • 2025 - Research.com Engineering and Technology in Belgium Leader Award

Overview

Lennart Martens is affiliated with Ghent University in Belgium, contributing extensively to the fields of biochemistry, genetics, molecular biology, and chemistry. Their research portfolio spans several subfields, including molecular biology, spectroscopy, biomedical engineering, infectious diseases, and cancer research.

The scientist's work concentrates on various advanced topics, particularly within proteomics and mass spectrometry. These topics include advanced proteomics techniques and applications, mass spectrometry techniques and applications, metabolomics and mass spectrometry studies, genomics and phylogenetic studies, machine learning in bioinformatics, bioinformatics and genomic networks, and vaccines and immunoinformatics approaches.

Lennart Martens has published numerous papers in several prominent scientific journals and venues. Notable recent publications include:

  • DeepLC can predict retention times for peptides that carry as-yet unseen modifications, 2021, Nature Methods
  • The RNA landscape of the human placenta in health and disease, 2021, Nature Communications
  • Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows, 2021, Nature Communications
  • MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates, 2022, Molecular & Cellular Proteomics
  • Immunopeptidomics-based design of mRNA vaccine formulations against Listeria monocytogenes, 2022, Nature Communications

Frequent co-authors in their work include:

  • Ralf Gabriels
  • Robbin Bouwmeester
  • Sven Degroeve
  • Arthur Declercq
  • Tim Van Den Bossche

Lennart Martens often publishes in several key venues, which highlight their research focus and engagement in these scientific communities. These venues include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Journal of Proteome Research
  • Zenodo (CERN European Organization for Nuclear Research)
  • Molecular & Cellular Proteomics
  • Nature Communications

Best Publications

  • ProteomeXchange provides globally coordinated proteomics data submission and dissemination

    Juan A. Vizcaíno;Eric W Deutsch;Rui Wang;Attila Csordas

  • The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways.

    Julia M. Burkhart;Marc Vaudel;Stepan Gambaryan;Sonja Radau

  • The minimum information about a proteomics experiment (MIAPE)

    Chris F. Taylor;Chris F. Taylor;Norman W. Paton;Norman W. Paton;Kathryn S. Lilley;Kathryn S. Lilley;Pierre Alain Binz;Pierre Alain Binz

  • Improved visualization of protein consensus sequences by iceLogo.

    Niklaas Colaert;Niklaas Colaert;Kenny Helsens;Kenny Helsens;Lennart Martens;Joël Vandekerckhove;Joël Vandekerckhove

  • mzML - a Community Standard for Mass Spectrometry Data

    Lennart Martens;Matthew Chambers;Marc Sturm;Darren Kessner

  • Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.

    Kris Gevaert;Marc Goethals;Lennart Martens;Jozef Van Damme

  • PRIDE: The proteomics identifications database

    Lennart Martens;Henning Hermjakob;Philip Jones;Marcin Adamski

  • LNCipedia: a database for annotated human lncRNA transcript sequences and structures.

    Pieter-Jan Volders;Kenny Helsens;Xiaowei Wang;Björn Menten

  • PeptideShaker enables reanalysis of MS-derived proteomics data sets

    Marc Vaudel;Julia M Burkhart;René P Zahedi;Eystein Oveland

  • LNCipedia 5: towards a reference set of human long non-coding RNAs.

    Pieter-Jan Volders;Jasper Anckaert;Kenneth Verheggen;Justine Nuytens

  • SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

    Manuel Tardaguila;Lorena de la Fuente;Cristina Marti;Cécile Pereira

  • SearchGUI: An open‐source graphical user interface for simultaneous OMSSA and X!Tandem searches

    Marc Vaudel;Harald Barsnes;Frode S. Berven;Albert Sickmann

  • A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

    Alexander W. Bell;Eric W. Deutsch;Catherine E. Au;Robert E. Kearney

  • An update on LNCipedia: a database for annotated human lncRNA sequences

    Pieter-Jan Volders;Kenneth Verheggen;Gerben Menschaert;Klaas Vandepoele

  • PRIDE: a public repository of protein and peptide identifications for the proteomics community

    Philip Jones;Richard G. Côté;Lennart Martens;Antony F. Quinn

  • Chromatographic Isolation of Methionine-containing Peptides for Gel-free Proteome Analysis Identification Of More Than 800 Escherichia Coli Proteins

    Kris Gevaert;Jozef Van Damme;Marc Goethals;Grégoire R. Thomas

  • Getting intimate with trypsin, the leading protease in proteomics

    Elien Vandermarliere;Michael Mueller;Lennart Martens

  • ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion.

    Niels Hulstaert;Jim Shofstahl;Timo Sachsenberg;Mathias Walzer

  • A guide to the Proteomics Identifications Database proteomics data repository.

    Juan Antonio Vizcaíno;Richard J Cote;Florian Reisinger;Joseph M. Foster

  • The Proteomics Identifications database: 2010 update

    Juan Antonio Vizcaíno;Richard G. Côté;Florian Reisinger;Harald Barsnes

  • Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis.

    Petra Van Damme;Lennart Martens;Jozef Van Damme;Koen Hugelier

  • LNCipedia: a database for annotated human lncRNA transcript sequences and structures

    Pieter-Jan Volders;Kenny Helsens;Xiaowei Wang;Lennart Martens

Frequent Co-Authors

Kris Gevaert
Kris Gevaert Ghent University
Joël Vandekerckhove
Joël Vandekerckhove Ghent University
Henning Hermjakob
Henning Hermjakob European Bioinformatics Institute
Rolf Apweiler
Rolf Apweiler European Bioinformatics Institute
Juan Antonio Vizcaíno
Juan Antonio Vizcaíno European Bioinformatics Institute
Albert Sickmann
Albert Sickmann Leibniz Institute for Neurobiology
Helmut E. Meyer
Helmut E. Meyer Ruhr University Bochum
Udo Reichl
Udo Reichl Otto-von-Guericke University Magdeburg
Eric W. Deutsch
Eric W. Deutsch University of Washington

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