Juan Antonio Vizcaíno

Overview

Best Publications

• The PRIDE database and related tools and resources in 2019: improving support for quantification data.

  Yasset Perez-Riverol;Attila Csordas;Jingwen Bai;Manuel Bernal-Llinares

  6891
  Citations

• The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.

  Yasset Perez-Riverol;Jingwen Bai;Chakradhar Bandla;David García-Seisdedos

  6511
  Citations

• 2016 update of the PRIDE database and its related tools

  Juan Antonio Vizcaíno;Attila Csordas;Noemi Del-Toro;José A. Dianes

  3820
  Citations

• ProteomeXchange provides globally coordinated proteomics data submission and dissemination

  Juan A. Vizcaíno;Eric W Deutsch;Rui Wang;Attila Csordas

  2978
  Citations

• The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.

  Juan Antonio Vizcaíno;Richard G. Côté;Attila Csordas;José A. Dianes

  2121
  Citations

• The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

  Eric W. Deutsch;Attila Csordas;Zhi Sun;Andrew Jarnuczak

  902
  Citations

• Shorthand notation for lipid structures derived from mass spectrometry

  Gerhard Liebisch;Juan Antonio Vizcaíno;Harald Köfeler;Martin Trötzmüller

  852
  Citations

• The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.

  Eric W. Deutsch;Nuno Bandeira;Nuno Bandeira;Vagisha Sharma;Yasset Pérez-Riverol

  748
  Citations

• The functional landscape of the human phosphoproteome

  David Ochoa;Andrew F. Jarnuczak;Cristina Viéitez;Maja Gehre

  484
  Citations

• Expression Atlas: gene and protein expression across multiple studies and organisms.

  Irene Papatheodorou;Nuno A. Fonseca;Maria Keays;Y. Amy Tang

  438
  Citations

• A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

  Alexander W. Bell;Eric W. Deutsch;Catherine E. Au;Robert E. Kearney

  407
  Citations

• Making sense of big data in health research: Towards an EU action plan

  Charles Auffray;Charles Auffray;Rudi Balling;Inês Barroso;László Bencze

  299
  Citations

• A guide to the Proteomics Identifications Database proteomics data repository.

  Juan Antonio Vizcaíno;Richard J Cote;Florian Reisinger;Joseph M. Foster

  283
  Citations

• The Proteomics Identifications database: 2010 update

  Juan Antonio Vizcaíno;Richard G. Côté;Florian Reisinger;Harald Barsnes

  278
  Citations

• The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

  Andrew R. Jones;Martin Eisenacher;Gerhard Mayer;Oliver Kohlbacher

  234
  Citations

• Expression Atlas update: gene and protein expression in multiple species.

  Pablo Moreno;Silvie Fexova;Nancy George;Jonathan R Manning

  221
  Citations

• Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

  Johannes Griss;Yasset Perez-Riverol;Steve Lewis;David L Tabb

  214
  Citations

• PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

  Yasset Perez-Riverol;Qing Wei Xu;Rui Wang;Julian Uszkoreit

  209
  Citations

• Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

  Yasset Perez-Riverol;Emanuele Alpi;Rui Wang;Henning Hermjakob

  209
  Citations

• PRIDE Converter: making proteomics data-sharing easy.

  Harald Barsnes;Juan Antonio Vizcaíno;Ingvar Eidhammer;Lennart Martens

  199
  Citations

• Discovering and linking public omics data sets using the Omics Discovery Index

  Yasset Perez-Riverol;Mingze Bai;Mingze Bai;Mingze Bai;Felipe Da Veiga Leprevost;Silvano Squizzato

  197
  Citations

• Ten Simple Rules for Taking Advantage of Git and GitHub.

  Yasset Perez-Riverol;Laurent Gatto;Rui Wang;Timo Sachsenberg

  166
  Citations

• The SysteMHC Atlas project.

  Wenguang Shao;Patrick G.A. Pedrioli;Witold Wolski;Cristian Scurtescu

  148
  Citations

• PRIDE Inspector: a tool to visualize and validate MS proteomics data

  Rui Wang;Antonio Fabregat;Daniel Ríos;David Ovelleiro

  132
  Citations

• A Golden Age for Working with Public Proteomics Data

  Lennart Martens;Juan Antonio Vizcaíno

  127
  Citations

• The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium

  Richard G. Côté;Johannes Griss;José A. Dianes;Rui Wang

  125
  Citations

• Genetic diversity shown in Trichoderma biocontrol isolates.

  M. Rosa Hermosa;Emma Keck;Isabel Chamorro;Belén Rubio

  115
  Citations

• The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

  Gerhard Mayer;Luisa Montecchi-Palazzi;David Ovelleiro;Andrew R. Jones

  103
  Citations

• Delicate Metabolic Control and Coordinated Stress Response Critically Determine Antifungal Tolerance of Candida albicans Biofilm Persisters

  Peng Li;Chaminda J. Seneviratne;Emanuele Alpi;Juan A. Vizcaino

  96
  Citations