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Computer Science
UK
2025

D-Index & Metrics

Computer Science

D-Index
100
Citations
104770
World Ranking
356
National Ranking
24

Research.com Recognitions

  • 2025 - Research.com Computer Science in United Kingdom Leader Award
  • 2023 - Research.com Computer Science in United Kingdom Leader Award
  • 2022 - Research.com Computer Science in United Kingdom Leader Award

Overview

Henning Hermjakob is affiliated with the European Bioinformatics Institute in the United Kingdom. Their research spans primarily the field of Biochemistry, Genetics and Molecular Biology, with significant contributions in molecular biology, information systems and management, spectroscopy, information systems, and computational theory and mathematics.

The scientist's work covers a range of main research topics, including:

  • Bioinformatics and Genomic Networks
  • Scientific Computing and Data Management
  • Microbial Metabolic Engineering and Bioproduction
  • Advanced Proteomics Techniques and Applications
  • Gene Regulatory Network Analysis
  • Biomedical Text Mining and Ontologies
  • Research Data Management Practices

Henning Hermjakob has published extensively, with a selection of recent papers including:

  • The reactome pathway knowledgebase 2022, 2021, Nucleic Acids Research
  • The Reactome Pathway Knowledgebase 2024, 2023, Nucleic Acids Research
  • iProX in 2021: connecting proteomics data sharing with big data, 2021, Nucleic Acids Research
  • MEMOTE for standardized genome-scale metabolic model testing, 2020, Nature Biotechnology
  • The IntAct database: efficient access to fine-grained molecular interaction data, 2021, Nucleic Acids Research

The scientist frequently collaborates with other researchers in their field. Regular co-authors include:

  • Rahuman S. Malik-Sheriff
  • Sandra Orchard
  • Ruedi Aebersold
  • Yu-Ju Chen
  • Terence Chuen Wai Poon

Henning Hermjakob publishes mainly in a number of venues known for their contributions to biology, bioinformatics, and proteomics. Frequent publication venues comprise:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • PROTEOMICS
  • Zenodo (CERN European Organization for Nuclear Research)
  • Nucleic Acids Research
  • Bioinformatics

Best Publications

  • Initial sequencing and analysis of the human genome.

    Eric S. Lander;Lauren M. Linton;Bruce Birren;Chad Nusbaum

  • The Reactome Pathway Knowledgebase.

    Antonio Fabregat;Konstantinos Sidiropoulos;Phani V. Garapati;Marc Gillespie;Marc Gillespie

  • The Reactome pathway knowledgebase

    Unknown

  • 2016 update of the PRIDE database and its related tools

    Juan Antonio Vizcaíno;Attila Csordas;Noemi Del-Toro;José A. Dianes

  • ProteomeXchange provides globally coordinated proteomics data submission and dissemination

    Juan A. Vizcaíno;Eric W Deutsch;Rui Wang;Attila Csordas

  • The Reactome Pathway Knowledgebase

    Unknown

  • The reactome pathway knowledgebase 2022.

    Marc Gillespie;Marc Gillespie;Bijay Jassal;Ralf Stephan;Marija Milacic

  • The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.

    Juan Antonio Vizcaíno;Richard G. Côté;Attila Csordas;José A. Dianes

  • The reactome pathway knowledgebase

    Unknown

  • Reactome: a database of reactions, pathways and biological processes

    David Croft;Gavin O'Kelly;Guanming Wu;Robin Haw

  • The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.

    Sandra Orchard;Mais Ammari;Bruno Aranda;Lionel Breuza

  • Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL

    T. Heinemeyer;E. Wingender;I. Reuter;H. Hermjakob

  • iProX: an integrated proteome resource.

    Jie Ma;Tao Chen;Songfeng Wu;Chunyuan Yang

  • The minimum information about a genome sequence (MIGS) specification.

    Dawn Field;George Garrity;Tanya Gray;Norman Morrison

  • The InterPro database, an integrated documentation resource for protein families, domains and functional sites

    Rolf Apweiler;Terri K. Attwood;Amos Bairoch;Alex Bateman

  • The IntAct molecular interaction database in 2012

    Samuel Kerrien;Bruno Aranda;Lionel Breuza;Alan Bridge

  • IntAct: an open source molecular interaction database

    Henning Hermjakob;Luisa Montecchi-Palazzi;Chris Lewington;Sugath Mudali

  • Reactome pathway analysis: a high-performance in-memory approach

    Antonio Fabregat;Konstantinos Sidiropoulos;Guilherme Viteri;Oscar Forner

  • Reactome knowledgebase of human biological pathways and processes.

    Lisa Matthews;Gopal Gopinath;Marc Gillespie;Michael Caudy

  • A common open representation of mass spectrometry data and its application to proteomics research

    Patrick G A Pedrioli;Jimmy K Eng;Robert Hubley;Mathijs Vogelzang

  • IntAct—open source resource for molecular interaction data

    Samuel Kerrien;Yasmin Alam-Faruque;Bruno Aranda;I. Bancarz

  • The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

    Eric W. Deutsch;Attila Csordas;Zhi Sun;Andrew Jarnuczak

  • The IntAct molecular interaction database in 2010

    Bruno Aranda;P. Achuthan;Yasmin Alam-Faruque;Irina M. Armean

Frequent Co-Authors

Sandra Orchard
Sandra Orchard European Bioinformatics Institute
Rolf Apweiler
Rolf Apweiler European Bioinformatics Institute
Juan Antonio Vizcaíno
Juan Antonio Vizcaíno European Bioinformatics Institute
Eric W. Deutsch
Eric W. Deutsch University of Washington
Lincoln Stein
Lincoln Stein Ontario Institute for Cancer Research
Yasset Perez-Riverol
Yasset Perez-Riverol European Bioinformatics Institute
Chris F. Taylor
Chris F. Taylor European Bioinformatics Institute
Peipei Ping
Peipei Ping University of California, Los Angeles
Peter D'Eustachio
Peter D'Eustachio New York University
Nicolas Le Novère
Nicolas Le Novère Babraham Institute

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