John R. Yates

Research.com Recognitions

• 2026 - Research.com Biology and Biochemistry in United States Leader Award
• 2025 - Research.com Best Scientists Award
• 2025 - Research.com Biology and Biochemistry in United States Leader Award
• 2023 - Research.com Biology and Biochemistry in United States Leader Award

Overview

Best Publications

• An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database.

  Jimmy K. Eng;Ashley L. McCormack;John R. Yates

  7998
  Citations

• Large-scale analysis of the yeast proteome by multidimensional protein identification technology.

  Michael P. Washburn;Dirk Wolters;John R. Yates;John R. Yates

  5954
  Citations

• Direct analysis of protein complexes using mass spectrometry

  Andrew J. Link;Jimmy Eng;David M. Schieltz;Edwin Carmack

  3091
  Citations

• A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics

  Hongbin Liu;Hongbin Liu;Rovshan G. Sadygov;John R. Yates;John R. Yates

  3050
  Citations

• Wnt proteins are lipid-modified and can act as stem cell growth factors

  Karl Willert;Jeffrey D. Brown;Esther Danenberg;Andrew W. Duncan

  2868
  Citations

• Microglia Promote Learning-Dependent Synapse Formation through Brain-Derived Neurotrophic Factor

  Christopher N. Parkhurst;Guang Yang;Ipe Ninan;Jeffrey N. Savas

  2798
  Citations

• An Automated Multidimensional Protein Identification Technology for Shotgun Proteomics

  Dirk A. Wolters;Michael P. Washburn;John R. Yates

  2353
  Citations

• Identification of the tuberous sclerosis gene TSC1 on chromosome 9q34

  Marjon van Slegtenhorst;Ronald de Hoogt;Caroline Hermans;Mark Nellist

  1817
  Citations

• A proteomic view of the Plasmodium falciparum life cycle

  Laurence Florens;Michael P. Washburn;J. Dale Raine;Robert M. Anthony

  1696
  Citations

• Method to Correlate Tandem Mass Spectra of Modified Peptides to Amino Acid Sequences in the Protein Database

  John R. Yates;Jimmy K. Eng;Ashley L. McCormack;David. Schieltz

  1653
  Citations

• Protein Analysis by Shotgun/Bottom-up Proteomics

  Yaoyang Zhang;Bryan R. Fonslow;Bing Shan;Moon-Chang Baek;Moon-Chang Baek

  1635
  Citations

• Protein sequencing by tandem mass spectrometry

  Donald F. Hunt;John R. Yates;Jeffrey Shabanowitz;Scott Winston

  1625
  Citations

• Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

  Michael J. Carrozza;Bing Li;Laurence Florens;Tamaki Suganuma

  1528
  Citations

• The hMre11/hRad50 protein complex and Nijmegen breakage syndrome: linkage of double-strand break repair to the cellular DNA damage response.

  James P Carney;James P Carney;Richard S Maser;Heidi Olivares;Elizabeth M Davis

  1490
  Citations

• Proteomics by Mass Spectrometry: Approaches, Advances, and Applications

  John R. Yates;Cristian I. Ruse;Aleksey Nakorchevsky

  1413
  Citations

• Assembly and aggregation properties of synthetic Alzheimer's A4/beta amyloid peptide analogs.

  Debra Burdick;Brian Soreghan;Michael Kwon;Joseph Kosmoski

  1374
  Citations

• Role of Rpn11 Metalloprotease in Deubiquitination and Degradation by the 26S Proteasome

  Rati Verma;L. Aravind;Robert Oania;W. Hayes McDonald

  1308
  Citations

• Current Protocols in Bioinformatics

  Alex Bateman;William R. Pearson;Lincoln D. Stein;Gary D. Stormo

  1236
  Citations

• Mass spectrometry and the age of the proteome.

  John R. Yates

  1128
  Citations

• Clinical Features and Natural History of von Hippel-Lindau Disease

  E R Maher;J R Yates;R Harries;Caroline Benjamin

  1121
  Citations